Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,373,807 – 5,373,916 |
Length | 109 |
Max. P | 0.960351 |
Location | 5,373,807 – 5,373,916 |
---|---|
Length | 109 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 86.29 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -23.74 |
Energy contribution | -24.10 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.05 |
Mean z-score | -2.37 |
Structure conservation index | 0.88 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960351 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5373807 109 + 23771897 UCUACCUCCCUCCACAUUUUCACACCACCCCCUCCCUUCGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCG ......................................(((((((((((((.(((..(........)..)))(((((.............))))))))))))).))))) ( -26.32) >DroSec_CAF1 23118 109 + 1 UCUACCUCCCCCGAAAAUUUCACACCACCCCCUCCCUUCGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCG ......................................(((((((((((((.(((..(........)..)))(((((.............))))))))))))).))))) ( -26.32) >DroSim_CAF1 21276 108 + 1 UCUACCUCCCCC-AAAAUUUCACACCACCCCCUCCCAUCGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCG ............-.........................(((((((((((((.(((..(........)..)))(((((.............))))))))))))).))))) ( -26.32) >DroEre_CAF1 21808 104 + 1 UCUACCCC--C-CGAAUUUUCCCAACACCCCCUU--UCGGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCA ........--.-((((.................)--)))((((((((((((.(((..(........)..)))(((((.............))))))))))))).)))). ( -26.85) >DroYak_CAF1 21715 105 + 1 UCUACCCCC-C-CAAAUUUUCACCCCACCCCCUU--UUUGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCA .........-.-......................--..(((((((((((((.(((..(........)..)))(((((.............))))))))))))).))))) ( -25.62) >DroAna_CAF1 22042 103 + 1 GCCACCACCCCC-GACCUCUG---UCAGCCCCUG--UUGGGGCUCAUGUGCUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACACACCGACCGCACAUGCUGACCA ............-.......(---((((((((..--..))))).(((((((.(((..(........)..)))((((...............))))))))))).)))).. ( -29.96) >consensus UCUACCUCCCCCCAAAUUUUCACACCACCCCCUC__UUCGGUCGCAUGUGUUGCACUCGGACAAAAGUUUGCGGUUAAAUUUACACAUGCUGACCGCACAUGCUGACCA .......................................((((((((((((.(((..(........)..)))(((((.............))))))))))))).)))). (-23.74 = -24.10 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:01 2006