Locus 1920

Sequence ID 3L_DroMel_CAF1
Location 5,373,290 – 5,373,381
Length 91
Max. P 0.877243
window2995

overview

Window 5

Location 5,373,290 – 5,373,381
Length 91
Sequences 6
Columns 91
Reading direction forward
Mean pairwise identity 74.43
Mean single sequence MFE -11.17
Consensus MFE -8.74
Energy contribution -8.83
Covariance contribution 0.08
Combinations/Pair 1.25
Mean z-score -1.04
Structure conservation index 0.78
SVM decision value 0.90
SVM RNA-class probability 0.877243
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5373290 91 + 23771897
UUAAACCCCACACUCCCCCCCAAUGACCCAAACCCGUUGAUUUAAUUUAUUACCCAACUGCGCUCUGGUCGCAGAGCCAUUUCAGAUAAAU
....................(((((.........))))).....(((((((.......((.((((((....)))))))).....))))))) ( -13.10)
>DroSec_CAF1 22741 70 + 1
UUAACCCCCAC---------------------CCCGUUGAUUUAAUUUAUUACCCAACUGCGCUCUGGUCGCAGAGCCAUUUCAGAUAAAU
...........---------------------...((((...............))))((.((((((....))))))))............ ( -10.96)
>DroSim_CAF1 20910 70 + 1
UUAACCCCCAC---------------------CCCGUUGAUUUAAUUUAUUACCCAACUGCGCUCUGGUCGCAGAGCCAUUUCAGAUAAAU
...........---------------------...((((...............))))((.((((((....))))))))............ ( -10.96)
>DroEre_CAF1 21315 82 + 1
CCAGCCC---------CCCUCAAUAACCCCACCCUGUUGAUUUAAUUUAUUACCCAACUGCGCUCUGGUCGCAGAGCCAUUUCAGAUAAAU
.......---------...((((((.........))))))....(((((((.......((.((((((....)))))))).....))))))) ( -12.90)
>DroYak_CAF1 21186 81 + 1
UUUGGAC---------CC-CCAAUAACCCCAACCCGUUGAUUUAAUUUAUUACCCAACUGCGCUCUGGUCGCAGAGCCAUUUCAGAUAAAU
.((((..---------..-))))......(((....))).....(((((((.......((.((((((....)))))))).....))))))) ( -13.60)
>DroAna_CAF1 21897 75 + 1
CCUCCUC---------CUCU-------UCCCCCCUGUUGAUUUAAUUUAUGACCCGACUGCGUACUGGACGCCUCGCUAUUUCAGAUAAAU
.......---------....-------...........................(((..((((.....)))).)))............... (  -5.50)
>consensus
UUAACCC_________CC_________CCCA_CCCGUUGAUUUAAUUUAUUACCCAACUGCGCUCUGGUCGCAGAGCCAUUUCAGAUAAAU
...................................((((...............))))((.((((((....))))))))............ ( -8.74 =  -8.83 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:20:00 2006