| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 545,384 – 545,475 |
| Length | 91 |
| Max. P | 0.548553 |
| Location | 545,384 – 545,475 |
|---|---|
| Length | 91 |
| Sequences | 3 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.35 |
| Mean single sequence MFE | -37.57 |
| Consensus MFE | -30.97 |
| Energy contribution | -31.30 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.548553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 545384 91 - 23771897 GUUGCACAAUGCGACGAGAAG------------------------AGGGCGCAGGGGCGUGAGAGGACAGCCGACGGAAGUGGGCGUGGCCGCAUAACUCUUCAGGUGUGCUGGU (((((.....)))))..((((------------------------((.((((....))))..(.((.(((((.((....)).))).)).)).)....))))))............ ( -34.70) >DroEre_CAF1 23268 97 - 1 GUUGCACAAUGCGGCGACAAG------------------GGCGAGCGGGCGCAGGGGCGUGAGGCGACAGCCGACGGAAGUGGGCGUGGGCGCAUAACUCUUCAGGUGUGCUGGU (((((........)))))...------------------.((.((((.((.(.((((.((...(((.(((((.((....)).))).))..)))...)).)))).))).)))).)) ( -38.50) >DroYak_CAF1 20012 115 - 1 GUUGCACAAUGCGGCGACAAGAGGGGGGCAAGUAGAAGAGGCAAGAGGGCGCAGGGGCGUGAGACGACAGCCGACGGAAGUGGGCGUGGGCGCAUAACUCUUCAGGUGUGCUGGU (((((........)))))......((.(((....((((((........((((.....(....).(.((.(((.((....)).))))).)))))....))))))...))).))... ( -39.50) >consensus GUUGCACAAUGCGGCGACAAG__________________GGC_AGAGGGCGCAGGGGCGUGAGACGACAGCCGACGGAAGUGGGCGUGGGCGCAUAACUCUUCAGGUGUGCUGGU ...((((.(((((.(.((..............................((((....)))).........(((.((....)).))))).).))))).(((.....))))))).... (-30.97 = -31.30 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:24 2006