Locus 1917

Sequence ID 3L_DroMel_CAF1
Location 5,364,300 – 5,364,393
Length 93
Max. P 0.766951
window2991

overview

Window 1

Location 5,364,300 – 5,364,393
Length 93
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 76.82
Mean single sequence MFE -24.71
Consensus MFE -16.32
Energy contribution -16.27
Covariance contribution -0.06
Combinations/Pair 1.08
Mean z-score -1.39
Structure conservation index 0.66
SVM decision value 0.52
SVM RNA-class probability 0.766951
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5364300 93 - 23771897
CGCUGCGGGCUAUUGCCCAGGCAAAGACCAAAGAGAAAUAUUGGUUAAUUUCGGGAACCGAAGCUUGUAAUACCCUAA-GUGAGUAUUCGUUAU------
((((..(((.((((((..((((...((((((..(....).))))))...(((((...))))))))))))))))))..)-)))............------ ( -25.50)
>DroSec_CAF1 13562 93 - 1
CGCUGCGGGCUAUUGCCCAAGCAAAGACCAAAGAGAAAUAUUGGUUAAUUUCGGGAACCGAAGCUUGUAAUACCCUAU-AUGGUUAUAAGUUGU------
.(((..((((....)))).)))...((((((..(....).))))))....((((...))))((((((((..(((....-..)))))))))))..------ ( -27.50)
>DroSim_CAF1 11637 93 - 1
CGCUGCGGGCUAUUGCCCAAGCAAAGACCAAAGAGAAAUAUUGGUUAAUUUCGGGAACCGAAGUUUGUAGUACCCUAU-AUGGUUAUUCGUUGU------
.(((..((((....)))).)))...(((((...((...(((((...((((((((...))))))))..)))))..))..-.))))).........------ ( -26.20)
>DroEre_CAF1 12129 100 - 1
CGCUGCGGGCUAUUGCCCAAGCAAAGACCAAAGAGAAAUAUUGGUUAAUUUCGGGUGGAGAAGCUUGAAAUACCCUCGAUUUGGUAGUCGUUGUAACUCC
.(((..((((....)))).)))....((((((..((......(((..(((((((((......)))))))))))).))..))))))............... ( -28.60)
>DroYak_CAF1 11984 100 - 1
CGCUGCGGGCUAUUGCCCAGGCAAAGACCAAAGAGAAAUAUUGGUUCAUUUCGAGUACAGACCAAUGAAGUACCCUCAACUUAAUAUUCAUUGUAAUUCU
.(((..((((....)))).)))...((((((..(....).))))))................(((((((.................)))))))....... ( -21.03)
>DroAna_CAF1 11797 92 - 1
UGCUGCGGGCUAUUGCCCAAGCUAAGACCAAAGCGAAUAAAUGGUUGAUUUUUGUAGCCGAUGAUUCAAAUACACUUA-CCAGGA-ACAAAUAU------
..(((.((((....))))..(((........)))((((...((((((.......))))))...))))...........-.)))..-........------ ( -19.40)
>consensus
CGCUGCGGGCUAUUGCCCAAGCAAAGACCAAAGAGAAAUAUUGGUUAAUUUCGGGAACCGAAGCUUGAAAUACCCUAA_AUGGGUAUUCGUUGU______
.(((..((((....)))).)))...((((((.........))))))...................................................... (-16.32 = -16.27 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:56 2006