Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,362,799 – 5,362,904 |
Length | 105 |
Max. P | 0.921755 |
Location | 5,362,799 – 5,362,904 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 82.93 |
Mean single sequence MFE | -39.80 |
Consensus MFE | -26.73 |
Energy contribution | -27.73 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.29 |
Mean z-score | -2.30 |
Structure conservation index | 0.67 |
SVM decision value | 1.14 |
SVM RNA-class probability | 0.921755 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5362799 105 + 23771897 GGGCAGGAAAAUGGUGGGAGCGGGAGCGGGAGGGGGGGGAGUGGGCGGCAUUAAAUGGCCGCCGCGGUCUCGUCACGUAAAUCGCUCGCCUUGGUUUUUCACUGA .....(((((((.(.((((((((..(((.....((.((((.((((((((........)))))).)).)))).)).)))...)))))).)).).)))))))..... ( -44.60) >DroSec_CAF1 11991 102 + 1 GGGCAGGAAAACGAGGGGAGCGGGAGCGGGAGG---AGGAGUGGGCGGCAUUAAAUGGCCGCGGCGGUCUCGUCACGUAAAUCCCUCGCCUUGGUUUUUCACUGA ...(((((((.(((((.(((.(((.(((.((.(---(((.((.(.((((........))))).))..)))).)).)))...)))))).)))))...)))).))). ( -42.10) >DroSim_CAF1 10084 102 + 1 GGGUAGGAAAACGGAGGGAGCGGGAGUGGGAGG---GGGAGUGGGCGGCAUUAAAUGGCCGCGGCGGUCUCGUCACGUAAAUCGCUCGCCUUGGUUUUUCACUGA .(((.(((((((.((((((((((..((((..((---((..((.(.((((........))))).))..)))).)))).....)))))).)))).)))))))))).. ( -44.70) >DroAna_CAF1 9697 92 + 1 GGGUGGGAAAAAGGA--AAACAGGU-------G---GGGAGCGGGUGGCAUUAAAUGGUCGCGGCGGUCUCGUCACGUAAAUCGCUCGUCUUGGUCUUUU-UUAA .......((((((((--...((((.-------.---(.(((((((((((........)))))((((....)))).......)))))).))))).))))))-)).. ( -27.80) >consensus GGGCAGGAAAACGGAGGGAGCGGGAGCGGGAGG___GGGAGUGGGCGGCAUUAAAUGGCCGCGGCGGUCUCGUCACGUAAAUCGCUCGCCUUGGUUUUUCACUGA .....(((((((.((((..((....))...........(((((((((((........)))))((((....)))).......)))))).)))).)))))))..... (-26.73 = -27.73 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:55 2006