Locus 1913

Sequence ID 3L_DroMel_CAF1
Location 5,351,539 – 5,351,659
Length 120
Max. P 0.985473
window2985

overview

Window 5

Location 5,351,539 – 5,351,659
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.33
Mean single sequence MFE -32.88
Consensus MFE -27.32
Energy contribution -27.64
Covariance contribution 0.32
Combinations/Pair 1.09
Mean z-score -2.31
Structure conservation index 0.83
SVM decision value 2.01
SVM RNA-class probability 0.985473
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5351539 120 + 23771897
UGCGCUGCCACUUUCUUUUGGCUGUUUAUUUUUGUUGGCAACCGCCAAAGUUUUGUUGCACAAUUUGCUGCUCAAACAAAGCCAAAACAAUUUAAUUGUCACAGUCGACGAAGUGUGGCA
......(((((((((((((((((...........(((((....))))).((((.((.(((.....))).))..))))..))))))))..........(((......))))))).))))). ( -34.80)
>DroSim_CAF1 102498 120 + 1
UGCGCUGCCACUUUCUUUUGGCUGUUUAUUUUUGUUGGCAACCGCCAAAGUUUUGUUGCACAAUUUGCUGCUCAAACAAAGCCAAAACAAUUUAAUUGUCACAGUCGACGAAGUGAGGCA
...(((..((((((...((((((((.....(((((((((....))))).(((((((((((........)))...))))))))))))(((((...))))).)))))))).)))))).))). ( -33.30)
>DroEre_CAF1 99365 120 + 1
UGCGCUGCCACUUUCUUUUGGCUGCUUAUUUUUGUUGGCAACCGCCAAAGUUUUGUUGCACAAUUUGCUGCUCAAACAAAGCCAAAACAAUUUAAUUGUCACAGUCAACGAAGUGAGGCA
...(((..((((((...(((((((......(((((((((....))))).(((((((((((........)))...))))))))))))(((((...)))))..))))))).)))))).))). ( -32.40)
>DroYak_CAF1 108157 120 + 1
UGCGCUGCCACUUUCUUUUGGCUGUUUAUUUUUGUUGGCAACCGCCAAAGUUUUGUUGCACAAUUUGCUGCUCAAACAAAGCCAAAACAAUUUAAUUGUCACAGUCGACGAAGUGAGGCA
...(((..((((((...((((((((.....(((((((((....))))).(((((((((((........)))...))))))))))))(((((...))))).)))))))).)))))).))). ( -33.30)
>DroAna_CAF1 100859 119 + 1
AGCC-CAGCACUUUCUUUUCGUUGUUUAUUUUUCUUGGCAACCGCCAAAGUUUUGUUGCACAAUUUGCCGCUCAAACAAAGCCAAAACAAUUUAAUUGUCACAGUCGAGGAAGUGAGGCA
.(((-...(((((((((...(((((((.......(((((....))))).(((((((((((.....)))......))))))))..)))))))...((((...)))).))))))))).))). ( -30.60)
>consensus
UGCGCUGCCACUUUCUUUUGGCUGUUUAUUUUUGUUGGCAACCGCCAAAGUUUUGUUGCACAAUUUGCUGCUCAAACAAAGCCAAAACAAUUUAAUUGUCACAGUCGACGAAGUGAGGCA
...(((..((((((...((((((((.........(((((....))))).((((((..(((.....))).(((.......)))))))))............)))))))).)))))).))). (-27.32 = -27.64 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:51 2006