Locus 1912

Sequence ID 3L_DroMel_CAF1
Location 5,350,594 – 5,350,714
Length 120
Max. P 0.513877
window2984

overview

Window 4

Location 5,350,594 – 5,350,714
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.51
Mean single sequence MFE -28.91
Consensus MFE -21.34
Energy contribution -20.65
Covariance contribution -0.69
Combinations/Pair 1.26
Mean z-score -1.81
Structure conservation index 0.74
SVM decision value -0.04
SVM RNA-class probability 0.513877
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5350594 120 + 23771897
CAAAGUGAGCAGCUUGAUAAUCAGGCACUCAAUUAUCCCCUAAGUUUUCACUAAUUGCUUGGCUUAAAGUCAAGUAGUAGCGGGCAGACCUUCAACCUCUUUUCACUACCCCAGCCCGCC
...((((((.(((((((((((..........))))))....))))))))))).((((((((((.....)))))))))).((((((............................)))))). ( -31.79)
>DroSec_CAF1 98466 117 + 1
CAAAUUGAGCAGCUUGAUAAUCAGGCACUCAAUUAUCCCCUAAGUUUUCACUAAUUGCUUGGCUUAAAGUCAAGC---AGCGGGCAGACCUUCGACCUCUUUUCGUUCCCCCAGCCCGCC
..(((((((..(((((.....))))).))))))).....................((((((((.....)))))))---)((((((.......(((.......)))........)))))). ( -36.96)
>DroSim_CAF1 101534 117 + 1
CAAAGUGAGCAGCUUGAUAAUCAGGCACUCAAUUAUCCCCUAAGUUUUCACUAAUUGCUUGGCUUAAAGUCAAGC---AGCGGGCAGACCUUCGACCUCUCUUCAUACCCCCAGCCCGCC
...((((((.(((((((((((..........))))))....)))))))))))...((((((((.....)))))))---)((((((.(.....)((.......)).........)))))). ( -32.30)
>DroEre_CAF1 98464 113 + 1
CAAAGUGA---GCUUGAUAAUCAGGCACUCAAUUAUCCAGCAAGUUUUCACUAAUUGGUUGGCUUAAAGUCAAGU---AGCGGGCAGACCUUCAGCUUCCUUUCAUUC-CCCAGCCCGCC
...(((((---(((((.....)))))....((((........)))).)))))...((.(((((.....))))).)---)((((((.......................-....)))))). ( -25.23)
>DroYak_CAF1 107195 113 + 1
CAAAGUGA---ACUUGAUAAUCAGGCACUCAAUUAUCCCCUAAGUUUUCACUAAUUGCUUGGCUUAAAGUCAAGU---AGCGGGCAGACCUUCGACUUCCUUUCAUUU-CCCAGCCCUUC
...(((((---((((((((((..........))))))....))))..)))))..(((((((((.....)))))))---)).((((.(.....)((.......))....-....))))... ( -22.60)
>DroAna_CAF1 100232 111 + 1
C---AUA---AGCUUGAUAAUCAGGCACUCAAUUAUCCCCUAAGUUUGCACUAAUUGGUUGGCUUAAAGUCAAGU---CGUGGCAGGACCUCCGUCAUCGUUGUGGCCCCCCCAGCUGCC
.---...---.(((((.....)))))..............................((((((......((((...---((((((.((....)))))).))...))))....))))))... ( -24.60)
>consensus
CAAAGUGA__AGCUUGAUAAUCAGGCACUCAAUUAUCCCCUAAGUUUUCACUAAUUGCUUGGCUUAAAGUCAAGU___AGCGGGCAGACCUUCGACCUCUUUUCAUUCCCCCAGCCCGCC
...........(((((((....((.((..((((((................))))))..)).))....)))))))....((((((............................)))))). (-21.34 = -20.65 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:49 2006