Locus 1911

Sequence ID 3L_DroMel_CAF1
Location 5,350,382 – 5,350,473
Length 91
Max. P 0.797864
window2983

overview

Window 3

Location 5,350,382 – 5,350,473
Length 91
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 74.18
Mean single sequence MFE -9.55
Consensus MFE -0.04
Energy contribution 0.40
Covariance contribution -0.44
Combinations/Pair 1.30
Mean z-score -1.59
Structure conservation index 0.00
SVM decision value 0.61
SVM RNA-class probability 0.797864
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5350382 91 - 23771897
CUAACUAC-----AUAU----AUAGCCACAUAAAUAUUGCACAAUCUGCUAUGUGAAAAUAAUAAAAAUAAUAAUCUUACUUUCAAUUAUGAGCGCACCA
........-----....----...(((.(((((((((.(((.....))).))))((((.(((..............))).))))..))))).).)).... (  -8.64)
>DroSec_CAF1 98234 82 - 1
CUAACUAG-----AUAU-----------UAUAAAUAUUGCACAAUCUGCUAUGUGAAACCAC--AAAAUAAUAAUCUAACUUUCAAUUAUGAGCACACCA
.....(((-----((((-----------(((.......(((.....)))..((((....)))--)..))))).)))))...................... (  -9.30)
>DroSim_CAF1 101303 81 - 1
CUAACUAG-----AUAU------------AUAAAUAUUGCACAAUCUGCUAUGUGAAACCAC--AAAAUAAUAAUCUAACUUUCAAUUAUGAGCACACCA
.....(((-----((..------------.........(((.....)))..((((....)))--)........)))))...................... (  -7.40)
>DroEre_CAF1 98218 91 - 1
UUAAAAAGUAAUCAUAU---UAUAGUAUUAUAG---CUAC-AUAUCUGCGAUGUGAAACCAC--AAAAUAGUAAUCCAACUUUCUAUCAUGUGUACAACA
.......(((.((((((---..(((...(((..---....-))).)))..))))))...(((--(..((((............))))..))))))).... ( -12.90)
>DroYak_CAF1 106890 98 - 1
CUAACUAGCAUACAUAUGUAUAUAUCCAUUUAAAUACUGCAAAAUCUACUAUGUGAAACCAC--AAAAUAAUAAUCAAACUUUUCAUUAUGUGCACACCA
.......(((((.....((((.((......)).))))..............((((....)))--)........................)))))...... (  -9.50)
>consensus
CUAACUAG_____AUAU____AUA____UAUAAAUAUUGCACAAUCUGCUAUGUGAAACCAC__AAAAUAAUAAUCUAACUUUCAAUUAUGAGCACACCA
.....................................(((....((........))...........(((((.............)))))..)))..... ( -0.04 =   0.40 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:48 2006