Locus 191

Sequence ID 3L_DroMel_CAF1
Location 544,721 – 544,817
Length 96
Max. P 0.866235
window275

overview

Window 5

Location 544,721 – 544,817
Length 96
Sequences 3
Columns 107
Reading direction reverse
Mean pairwise identity 84.23
Mean single sequence MFE -28.60
Consensus MFE -20.60
Energy contribution -22.38
Covariance contribution 1.78
Combinations/Pair 1.04
Mean z-score -2.43
Structure conservation index 0.72
SVM decision value 0.85
SVM RNA-class probability 0.866235
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 544721 96 - 23771897
GGGUG-----------AGACGCGACAAGAACUGCAAAAACAACAGCAACCAAAUAAAAAUAGCAUCAGCUAACCAGGCAGGCCGCCGUCCGUCUCUUUCGCCCAACG
(((((-----------(((((.(((......(((..........)))............((((....))))....(((.....))))))))))))....)))).... ( -28.00)
>DroEre_CAF1 22623 103 - 1
GGGUGAAGUCGCCUCGAGACGCGGCAAGAACUGCAAAAACAACAGCAACCAAAUAAAAAUAGAUUCAGCUAACCAG----GCCUCUGUCCGACUCUUUCGCCCACCG
(((((((((((....(((..((((......)))).................................(((.....)----)))))....)))))...)))))).... ( -24.50)
>DroYak_CAF1 19353 103 - 1
GGGUGAAGGCGCCUCGAGACGCGACAAGAGCUGCAAAAACAACAGCAACCAAAUAAAAAUAGCAUCAGCUAACCAG----GCCUCUGUCCGUCUCUUUCGCCCAGCA
((((((((....)..((((((.((((.((((((.........)))).............((((....)))).....----...)))))))))))).))))))).... ( -33.30)
>consensus
GGGUGAAG_CGCCUCGAGACGCGACAAGAACUGCAAAAACAACAGCAACCAAAUAAAAAUAGCAUCAGCUAACCAG____GCCUCUGUCCGUCUCUUUCGCCCAACG
((((((((.......((((((.(((......(((..........)))............((((....))))...............))))))))))))))))).... (-20.60 = -22.38 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:23 2006