| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,333,220 – 5,333,317 |
| Length | 97 |
| Max. P | 0.519773 |
| Location | 5,333,220 – 5,333,317 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 84.81 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -17.28 |
| Energy contribution | -16.07 |
| Covariance contribution | -1.22 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.74 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519773 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5333220 97 - 23771897 C---GCAUAAACAAAUGCGAGAAAAAACCCCCUUUAUUGAUUUCCACUAAGUGCGGUCAGCGCAAAUAGUGGUUAAUAGCUUUCACUAGACGAGGAAUAA- (---((((......)))))...........((((((((((...((((((..((((.....))))..))))))))))))(((......)).))))).....- ( -23.20) >DroSec_CAF1 81191 97 - 1 C---GCAUAAACAAAUGCGAGAAGAAACCCUCUUUAUUGAUUUCCACUAAGUGCGGUCAGCGCAAAAAGUGGUUAAUAGCUCUUACUAGACGAGGAAUAA- (---((((......))))).........((((.(((((((...(((((...((((.....))))...)))))))))))).(((....))).)))).....- ( -24.90) >DroSim_CAF1 83298 97 - 1 C---GCAUAAACAAAUGCGAGAAGAAACCCUCUUUAUUGAUUUCCACUAAGUGCGGUCAGCGCAAAAAGUGGUUAAUAGCUCUUACUAGACGAGGAAUAA- (---((((......))))).........((((.(((((((...(((((...((((.....))))...)))))))))))).(((....))).)))).....- ( -24.90) >DroEre_CAF1 80707 97 - 1 C---GCAUAAACAAAUGCGAGAAAAAAACCCCAUUAUUGAUUUCCACUAAGUGCGGUCAGCGCAAAAAGUGGUUAAUAGCUCUCGCCAGGCAAGGAAUAA- (---((((......)))))...........((..((((((...(((((...((((.....))))...)))))))))))(((.......)))..)).....- ( -22.40) >DroYak_CAF1 89436 97 - 1 C---GCAUAAACAAAUGCGAGAAAAAACCCCCUUUAUUGAUUUCCACUAAGUGCGGUCAGCGCAAUAAGUGGUCAAUAGCUCUCACCAGACAAGGAAUAA- (---((((......)))))...........((((((((((...(((((...((((.....))))...)))))))))))(.(((....)))))))).....- ( -23.20) >DroAna_CAF1 79739 101 - 1 CGGUGCAUAAACAAAUGCGAAGAAAAUUUCCAGCAAUCGAUUUUUACUAAUUGCGUCCAGCGCAAAGAGCGGUUAAUUGUUUUCCCUGAAGGAGGAAUUUU (..(((((......)))))..).(((.((((((((((..(((....((..(((((.....)))))..)).)))..)))))).(((.....))))))).))) ( -21.60) >consensus C___GCAUAAACAAAUGCGAGAAAAAACCCCCUUUAUUGAUUUCCACUAAGUGCGGUCAGCGCAAAAAGUGGUUAAUAGCUCUCACUAGACGAGGAAUAA_ ....((((......))))((((...........(((((((...(((((...((((.....))))...)))))))))))).))))................. (-17.28 = -16.07 + -1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:32 2006