Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,330,261 – 5,330,366 |
Length | 105 |
Max. P | 0.787843 |
Location | 5,330,261 – 5,330,366 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.45 |
Mean single sequence MFE | -34.27 |
Consensus MFE | -27.85 |
Energy contribution | -27.85 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.14 |
Structure conservation index | 0.81 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5330261 105 + 23771897 UUUGC----------GUUGUGUCA-AGCGAUUGGCAUCUGGUUCCAUAGUGUAGCGGUUAUCACGUCUGCUUUACACGCAGAAGGUCUCCGGUUCGAUCCCGGAUGGAACCAGGAG---- .....----------...((((((-(....)))))))(((((((((..(((((((((.........)))))..))))..........(((((.......))))))))))))))...---- ( -36.80) >DroVir_CAF1 104692 115 + 1 UUAUCUUAGAUGCAGGUAUAGACA-GACGGUGCUCAACUGGUUCCAUAGUGUAGCGGUUAUCACGUCUGCUUUACACGCAGAAGGUCUCCGGUUCGAUCCCGGAUGGAACCAAGUG---- ..(((((...(((..(((.((.((-((((.((((..((((......))))..))))(....).)))))))).)))..))).)))))....(((((.(((...))).))))).....---- ( -33.80) >DroGri_CAF1 85745 105 + 1 UUGUA----------GCUUAGACA-CUCGGCGCUCAAUUGGUUCCAUAGUGUAGCGGUUAUCACGUCUGCUUUACACGCAGAAGGUCUCCGGUUCGAUCCCGGAUGGAACCAUGUG---- (((.(----------((...(...-..)...)))))).((((((((..(((((((((.........)))))..))))..........(((((.......)))))))))))))....---- ( -30.60) >DroWil_CAF1 82350 110 + 1 CAGAG----------ACUUUGUCGCUGCGGCUUUCAACUGGUUCCAUAGUGUAGCGGUUAUCACGUCUGCUUUACACGCAGAAGGUCUCCGGUUCGAUCCCGGAUGGAACCAGGAUUCUG (((((----------.....((((...))))......(((((((((..(((((((((.........)))))..))))..........(((((.......))))))))))))))..))))) ( -36.50) >DroMoj_CAF1 14839 105 + 1 UUAUC----------AAAUAAGCA-AACGUUUUGCAACUGGUUCCAUAGUGUAGCGGUUAUCACGUCUGCUUUACACGCAAAAGGUCUCCGGUUCGAUCCCGGAUGGAACCAUGUG---- .....----------......(((-(.....)))).((((((((((..(((((((((.........)))))..))))..........(((((.......))))))))))))).)).---- ( -31.50) >DroAna_CAF1 76597 105 + 1 UUCGA----------ACUCUGCCA-GUCGAUGUUCAUCUGGUUCCAUAGUGUAGCGGUUAUCACGUCUGCUUUACACGCAGAAGGUCUCCGGUUCGAUCCCGGAUGGAACCAGGUU---- ...((----------((((.....-...)).))))(((((((((((..(((((((((.........)))))..))))..........(((((.......)))))))))))))))).---- ( -36.40) >consensus UUAUC__________ACUUAGACA_AACGGUGUUCAACUGGUUCCAUAGUGUAGCGGUUAUCACGUCUGCUUUACACGCAGAAGGUCUCCGGUUCGAUCCCGGAUGGAACCAGGUG____ ......................................((((((((..(((((((((.........)))))..))))..........(((((.......)))))))))))))........ (-27.85 = -27.85 + -0.00)
Location | 5,330,261 – 5,330,366 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 81.45 |
Mean single sequence MFE | -32.47 |
Consensus MFE | -29.09 |
Energy contribution | -29.20 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.09 |
Mean z-score | -1.54 |
Structure conservation index | 0.90 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.787843 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5330261 105 - 23771897 ----CUCCUGGUUCCAUCCGGGAUCGAACCGGAGACCUUCUGCGUGUAAAGCAGACGUGAUAACCGCUACACUAUGGAACCAGAUGCCAAUCGCU-UGACACAAC----------GCAAA ----...((((((((((((((.......))))).....(((((.......))))).(((.....))).......))))))))).........(((-((...))).----------))... ( -32.50) >DroVir_CAF1 104692 115 - 1 ----CACUUGGUUCCAUCCGGGAUCGAACCGGAGACCUUCUGCGUGUAAAGCAGACGUGAUAACCGCUACACUAUGGAACCAGUUGAGCACCGUC-UGUCUAUACCUGCAUCUAAGAUAA ----..(((((.....(((((.......))))).......((((.(((.(((((((((....)).(((.((...((....))..)))))...)))-)).)).))).)))).))))).... ( -32.10) >DroGri_CAF1 85745 105 - 1 ----CACAUGGUUCCAUCCGGGAUCGAACCGGAGACCUUCUGCGUGUAAAGCAGACGUGAUAACCGCUACACUAUGGAACCAAUUGAGCGCCGAG-UGUCUAAGC----------UACAA ----....(((((((((((((.......))))).....(((((.......))))).(((.....))).......)))))))).((((((...(..-...)...))----------).))) ( -31.10) >DroWil_CAF1 82350 110 - 1 CAGAAUCCUGGUUCCAUCCGGGAUCGAACCGGAGACCUUCUGCGUGUAAAGCAGACGUGAUAACCGCUACACUAUGGAACCAGUUGAAAGCCGCAGCGACAAAGU----------CUCUG ((((...((((((((((((((.......))))).....(((((.......))))).(((.....))).......)))))))))(((...((....))..)))...----------.)))) ( -34.50) >DroMoj_CAF1 14839 105 - 1 ----CACAUGGUUCCAUCCGGGAUCGAACCGGAGACCUUUUGCGUGUAAAGCAGACGUGAUAACCGCUACACUAUGGAACCAGUUGCAAAACGUU-UGCUUAUUU----------GAUAA ----....(((((((((((((.......))))).....(((((.......))))).(((.....))).......))))))))...((((.....)-)))......----------..... ( -28.30) >DroAna_CAF1 76597 105 - 1 ----AACCUGGUUCCAUCCGGGAUCGAACCGGAGACCUUCUGCGUGUAAAGCAGACGUGAUAACCGCUACACUAUGGAACCAGAUGAACAUCGAC-UGGCAGAGU----------UCGAA ----...((((((((((((((.......))))).....(((((.......))))).(((.....))).......))))))))).(((((.((...-.....))))----------))).. ( -36.30) >consensus ____CACCUGGUUCCAUCCGGGAUCGAACCGGAGACCUUCUGCGUGUAAAGCAGACGUGAUAACCGCUACACUAUGGAACCAGUUGAAAACCGAC_UGACAAAGC__________GACAA .......((((((((((((((.......))))).....(((((.......))))).(((.....))).......)))))))))..................................... (-29.09 = -29.20 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:31 2006