Locus 1902

Sequence ID 3L_DroMel_CAF1
Location 5,326,254 – 5,326,344
Length 90
Max. P 0.660935
window2961

overview

Window 1

Location 5,326,254 – 5,326,344
Length 90
Sequences 6
Columns 91
Reading direction reverse
Mean pairwise identity 76.74
Mean single sequence MFE -17.97
Consensus MFE -10.56
Energy contribution -11.26
Covariance contribution 0.70
Combinations/Pair 1.11
Mean z-score -1.56
Structure conservation index 0.59
SVM decision value 0.27
SVM RNA-class probability 0.660935
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5326254 90 - 23771897
GCAAAGAAAGUGAAAUGCACUAGAAAGCAUUGGGUGAGACAA-CGCAAGAGAGGAAGCUGAGUGCCCCACAAUUUUCAUGGGAAAACCAUU
.....((((((.....(((((....(((.(((.......)))-(....).......))).)))))......))))))((((.....)))). ( -19.70)
>DroSec_CAF1 73524 74 - 1
GCAAAGAAAGUGAAAUGCACUAGAAAGCAUUGG-----------------GAGGAAGCUGAGUGCCCCACAAUUUUCAUGGGAAAACCAUU
.....((((((.....(((((....(((.....-----------------......))).)))))......))))))((((.....)))). ( -16.30)
>DroSim_CAF1 75549 74 - 1
GCAAAGAAAGUGAAAUGCACUAGAAAGCAUUGG-----------------GAGGAAGCUGAGUGCCCCACAAUUUUCAUGGGAAAACCAUU
.....((((((.....(((((....(((.....-----------------......))).)))))......))))))((((.....)))). ( -16.30)
>DroEre_CAF1 73419 90 - 1
GCAAAGAAAGUGAAAUGCACUAGAAAGCUGUGAAUGAGGCAG-AGUAAGAGGGGCAGCUGAGUGUCCCACCAUUUUCAUGGGAAAACCAUU
.....(((((((..............(((.((.......)).-)))....((((((......))))))..)))))))((((.....)))). ( -22.60)
>DroYak_CAF1 82099 91 - 1
GCAAAGAAAGUGAAAUGCACUAGAAAGCCUUGGAUGAGACAGAAGUAAGAGAGGAAGCUGAGUGUCCCGCAAUUUUCAUGGGAAAACCAUU
.....((((((.....(((((((....((((.......((....))....))))...)).)))))......))))))((((.....)))). ( -17.40)
>DroAna_CAF1 72415 71 - 1
GAAAAGAAAGUGAAAUGCGCUACAC---ACUCA-----------------GAUGAAGAUGAGAAGAAAAGCGUUUUCAUGGGAAAACCAUU
.........((((((.(((((....---.((((-----------------........))))......)))))))))))((.....))... ( -15.50)
>consensus
GCAAAGAAAGUGAAAUGCACUAGAAAGCAUUGG_________________GAGGAAGCUGAGUGCCCCACAAUUUUCAUGGGAAAACCAUU
.....((((((.....(((((....(((............................))).)))))......))))))((((.....)))). (-10.56 = -11.26 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:28 2006