Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 65,819 – 65,932 |
Length | 113 |
Max. P | 0.928598 |
Location | 65,819 – 65,932 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 84.13 |
Mean single sequence MFE | -29.07 |
Consensus MFE | -21.86 |
Energy contribution | -22.53 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.10 |
Mean z-score | -2.60 |
Structure conservation index | 0.75 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928598 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 65819 113 + 23771897 UACUUGU--CGCCGUCAAGUAGAUCGUUAUAAAUUGCUCAAUUUUAGGAGAGCAAAGAAAAUGCACUUUUAGUGUUAAUAAAUAAUGACUGCUUACUCUACUCUGACUGCAAGCG .......--.((.(((((((((((((((((...((((((..........)))))).......((((.....))))......)))))))........)))))).)))).))..... ( -26.80) >DroEre_CAF1 18399 103 + 1 -GCUUGUUACGGCGUCAAGCAGAUCGUUAUAAAUUGCUCAAUUUUAGGAGAGCAAAGAAAAUGCAU-UUCAGGGUAAAUAAAUAAUGACUGCUUGGUCU----------CAGGCU -(((((....(((..(((((((.(((((((...((((((..........)))))).((((.....)-)))...........))))))))))))))))).----------))))). ( -30.80) >DroYak_CAF1 17724 104 + 1 UGCUUGUUGCGGCGUCAAGUAGAUCGUUAUAAAUUGCUCAAUUAUAGGAGAGCAAAGAAAAUGCAU-UUUAGUGUAAAUAAAUAAUGACUGCUUGCUCU----------CAGGCU .(((((....((.(.(((((((.(((((((...((((((..........))))))......(((((-....))))).....))))))))))))))).))----------))))). ( -29.60) >consensus UGCUUGUU_CGGCGUCAAGUAGAUCGUUAUAAAUUGCUCAAUUUUAGGAGAGCAAAGAAAAUGCAU_UUUAGUGUAAAUAAAUAAUGACUGCUUGCUCU__________CAGGCU .(((((.........(((((((.(((((((...((((((..........))))))......(((((.....))))).....))))))))))))))..............))))). (-21.86 = -22.53 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:01 2006