Locus 19

Sequence ID 3L_DroMel_CAF1
Location 65,819 – 65,932
Length 113
Max. P 0.928598
window23

overview

Window 3

Location 65,819 – 65,932
Length 113
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 84.13
Mean single sequence MFE -29.07
Consensus MFE -21.86
Energy contribution -22.53
Covariance contribution 0.67
Combinations/Pair 1.10
Mean z-score -2.60
Structure conservation index 0.75
SVM decision value 1.19
SVM RNA-class probability 0.928598
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 65819 113 + 23771897
UACUUGU--CGCCGUCAAGUAGAUCGUUAUAAAUUGCUCAAUUUUAGGAGAGCAAAGAAAAUGCACUUUUAGUGUUAAUAAAUAAUGACUGCUUACUCUACUCUGACUGCAAGCG
.......--.((.(((((((((((((((((...((((((..........)))))).......((((.....))))......)))))))........)))))).)))).))..... ( -26.80)
>DroEre_CAF1 18399 103 + 1
-GCUUGUUACGGCGUCAAGCAGAUCGUUAUAAAUUGCUCAAUUUUAGGAGAGCAAAGAAAAUGCAU-UUCAGGGUAAAUAAAUAAUGACUGCUUGGUCU----------CAGGCU
-(((((....(((..(((((((.(((((((...((((((..........)))))).((((.....)-)))...........))))))))))))))))).----------))))). ( -30.80)
>DroYak_CAF1 17724 104 + 1
UGCUUGUUGCGGCGUCAAGUAGAUCGUUAUAAAUUGCUCAAUUAUAGGAGAGCAAAGAAAAUGCAU-UUUAGUGUAAAUAAAUAAUGACUGCUUGCUCU----------CAGGCU
.(((((....((.(.(((((((.(((((((...((((((..........))))))......(((((-....))))).....))))))))))))))).))----------))))). ( -29.60)
>consensus
UGCUUGUU_CGGCGUCAAGUAGAUCGUUAUAAAUUGCUCAAUUUUAGGAGAGCAAAGAAAAUGCAU_UUUAGUGUAAAUAAAUAAUGACUGCUUGCUCU__________CAGGCU
.(((((.........(((((((.(((((((...((((((..........))))))......(((((.....))))).....))))))))))))))..............))))). (-21.86 = -22.53 +   0.67) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:30:01 2006