Locus 1899

Sequence ID 3L_DroMel_CAF1
Location 5,320,917 – 5,321,009
Length 92
Max. P 0.931749
window2955

overview

Window 5

Location 5,320,917 – 5,321,009
Length 92
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 76.75
Mean single sequence MFE -17.93
Consensus MFE -12.17
Energy contribution -12.17
Covariance contribution 0.00
Combinations/Pair 1.45
Mean z-score -1.75
Structure conservation index 0.68
SVM decision value 1.22
SVM RNA-class probability 0.931749
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5320917 92 - 23771897
UUCACCUUCAUUGCGCUCUUGUGGAU------UAUUUUAUUAUGUAGAU----UUUUCUGCAAGAUCUGUAGAG---GCA-----CCUGCUUAUCUUUGUUCGCACACUG
...................(((((((------..........((((((.----...))))))((((..((((..---...-----.))))..))))..)))))))..... ( -18.10)
>DroSec_CAF1 68176 83 - 1
--------CAUUGCGCUCUUGUGGAU------UAUUUUAUUAUGUAGAU----UUUUCUGAAAGAUCUGUAGAG---GCA-----CCUGCUUAUCUUUGUUCGCACACU-
--------...........(((((((------............((((.----...))))((((((..((((..---...-----.))))..)))))))))))))....- ( -15.90)
>DroSim_CAF1 70161 83 - 1
--------CAUUGCGCUCUUGUGGAU------UAUUUUAUUAUGUAGAU----UUUUCUGCAAGAUCUGUAGAG---GCA-----CCUGCUUAUCUUUGUUCGCACACU-
--------...........(((((((------..........((((((.----...))))))((((..((((..---...-----.))))..))))..)))))))....- ( -18.10)
>DroEre_CAF1 68166 87 - 1
---------AUUACGCUCUUGCGGAUUUUUAUUAUUUUAUUAUGUAGAU----UUUUCUACAAGAUCCAUAGA----ACA-----CCUGCUUAUCUUCAUUCGCACACU-
---------..........(((((((................((((((.----...))))))((((...(((.----...-----.)))...))))..)))))))....- ( -14.60)
>DroYak_CAF1 76596 90 - 1
UUCACCAACAUUACGCUCAUGCGGAU------UAUUUUAUUAGGUAGAU----AUUUCUACAAGAUCUGUAGA----ACA-----CCUGCUUAUCUUUCUUCGCACACU-
...................((((((.------...........(((((.----...)))))(((((..((((.----...-----.))))..)))))..))))))....- ( -18.80)
>DroAna_CAF1 67320 95 - 1
--------CAUUACGAUCUGGCGAGU------UCUUUUAUGAUGUAGAUCUGUUUUUUUUGGAGAUCUGCGAAGAGAACAGAUGUUCUGCUUAUCUUUUUUAGCACACU-
--------............((..((------((((((....(((((((((.(.......).)))))))))))))))))(((((.......)))))......)).....- ( -22.10)
>consensus
________CAUUACGCUCUUGCGGAU______UAUUUUAUUAUGUAGAU____UUUUCUGCAAGAUCUGUAGAG___ACA_____CCUGCUUAUCUUUGUUCGCACACU_
....................((((((.................(((((........)))))(((((..((((..............))))..))))).))))))...... (-12.17 = -12.17 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:23 2006