| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,317,025 – 5,317,127 |
| Length | 102 |
| Max. P | 0.839896 |
| Location | 5,317,025 – 5,317,127 |
|---|---|
| Length | 102 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 77.14 |
| Mean single sequence MFE | -19.51 |
| Consensus MFE | -8.70 |
| Energy contribution | -9.02 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.45 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839896 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5317025 102 - 23771897 CCCAAGUUAACUCCUCCUUUUGCUUACUUUACUUUACAGUUACUUUCAUUGGGGGCCUUCCUAUUGGCCCUAGUCGAUUUGCCAAUCAGCUUUGGCCACACC ...((((..(((........................((((.......))))((((((........)))))))))..))))(((((......)))))...... ( -22.10) >DroSec_CAF1 64286 88 - 1 UGUAAGGUAACUCCUCCUUUUG--------------GAGUUCCUUUCAUUGGGUCCCUUCCUAUUGGCACUCAUCGAUUUGCCAAUCAGCUUUGGCCACACC ((.((((.((((((.......)--------------))))))))).)).(((((.((........)).))))).......(((((......)))))...... ( -26.00) >DroSim_CAF1 66260 88 - 1 CCUAAGCUAACUCCUCCUUUUG--------------CAGCUCCUUCCAUUGGGUCCCUUCCUAUUGGCCCUCGUCGACUUGCCAAUCAGUUUUGGCCACACC ....((((..............--------------.))))....(((.((((......)))).))).............(((((......)))))...... ( -14.26) >DroEre_CAF1 64256 88 - 1 CUUAAUUUAACUCCUCCUUUCG--------------CAGCUAUUUUGAUUGGUUCCUUUCCUAUUGGUCCACGUCGAGUUGCCAAUCAGUAAUGGCCACGCC ....................((--------------..(((((((((((((((..(((.((....))........)))..))))))))).))))))..)).. ( -20.60) >DroYak_CAF1 72653 88 - 1 CUUAAGUUAACUCCUCCUCUUG--------------CUGCCAUUUUCAUUGGGCGCUUCUCUAUUGGCUCACGUCGAUUAGCCAAUCAGCUUUGGCCACACC .....................(--------------(.(((..........)))))......((((((....))))))..(((((......)))))...... ( -14.60) >consensus CCUAAGUUAACUCCUCCUUUUG______________CAGCUACUUUCAUUGGGUCCCUUCCUAUUGGCCCUCGUCGAUUUGCCAAUCAGCUUUGGCCACACC .............................................(((.((((......)))).))).............(((((......)))))...... ( -8.70 = -9.02 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:21 2006