| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,306,739 – 5,306,835 |
| Length | 96 |
| Max. P | 0.744922 |
| Location | 5,306,739 – 5,306,835 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 81.54 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -21.66 |
| Energy contribution | -22.18 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.744922 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5306739 96 + 23771897 C-CCGAA-----------AACCCCAAAAACUGAAAGCUGCAAACCGUUGAUGACAACGUCGACAUCGCGGCAUUAUGACUUUUGGCCUUAAGCCAGGGAUAUUGGAGC .-((((.-----------...(((...........(((((.....(((((((....)))))))...)))))...........((((.....)))))))...))))... ( -27.10) >DroPse_CAF1 98411 82 + 1 CUCUGCAAACC------------------------UCCGCAAACCGUUGAUGACAACGUCGACAUCGCGGCAUUAUGACUCUUGGCUUUAAGCCAGAGA--UCGAAGC ....((.....------------------------.((((.....(((((((....)))))))...)))).....(((((((.(((.....))))))).--)))..)) ( -23.10) >DroSec_CAF1 53870 107 + 1 C-CCGAAAGCCCCCGAAAAUCCCCAAAAAGUGAUAGCUGCAAACCGUUGAUGACAACGUCGACAUCGCGGCAUUAUGACUUUUGGCCUUAAGCCAGGGAUAUUGGAGC .-......((..((((..(((((..((((((.((((((((.....(((((((....)))))))...)))))..))).))))))(((.....))).))))).)))).)) ( -33.90) >DroSim_CAF1 55748 107 + 1 C-CCGAAAGCCCCCGAAAAACCCCAAAAACUGAUAGCUGCAAACCGUUGAUGACAACGUCGACAUCGCGGCAUUAUGACUUUUGGCCUUAAGCCAGGGAUAUUGGAGC .-((((...(((.......................(((((.....(((((((....)))))))...)))))...........((((.....)))))))...))))... ( -28.00) >DroEre_CAF1 53155 100 + 1 C-CCUA-------CCAAAAACCCCAAAAACUGAGAGCUGCAAACCGUUGAUGACAACGUCGACAUCGCGGCAUUAUGACUUUUGGCCUUAAGCCAGGGAUAUUGGAGC .-....-------((((....(((...........(((((.....(((((((....)))))))...)))))...........((((.....)))))))...))))... ( -27.60) >DroYak_CAF1 61856 96 + 1 C-CG-----------CAAAAGCCCAAAAACUGAAAGCUGCAAACCGUUGAUGACAACGUCGACAUCGCGGCAUUAUGACUUUUGGCCUUAAGCCAGGGAUAUUGGAGC .-..-----------.....((((((.........(((((.....(((((((....)))))))...)))))........(((((((.....)))))))...)))).)) ( -26.10) >consensus C_CCGAA________AAAAACCCCAAAAACUGAAAGCUGCAAACCGUUGAUGACAACGUCGACAUCGCGGCAUUAUGACUUUUGGCCUUAAGCCAGGGAUAUUGGAGC .....................(((...........(((((.....(((((((....)))))))...)))))...........((((.....))))))).......... (-21.66 = -22.18 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:20 2006