Locus 1895

Sequence ID 3L_DroMel_CAF1
Location 5,301,240 – 5,301,334
Length 94
Max. P 0.960686
window2951

overview

Window 1

Location 5,301,240 – 5,301,334
Length 94
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 81.77
Mean single sequence MFE -27.80
Consensus MFE -18.34
Energy contribution -19.28
Covariance contribution 0.94
Combinations/Pair 1.11
Mean z-score -2.46
Structure conservation index 0.66
SVM decision value 1.52
SVM RNA-class probability 0.960686
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5301240 94 + 23771897
UUACAAUGAGUGGGCCCACCAGACGUAUGAGUUAUGUUUGCAAAAUGUCGGCGAAUGCAAU--GCCAAUUUAGUGGGUCU--UAGCAUGCUUUAAAAU
.....(((...((((((((((((((((.....)))))))).........((((.......)--)))......))))))))--...))).......... ( -26.70)
>DroSim_CAF1 50302 84 + 1
UUACAAUGAGUGGGCCCACCAGACGUAUGAGUUAUGUUUGAAAAAUGUCGGCGAAUGCCUU--GCCAAUUUAGUGGGCC------------UUAAAAU
...........((((((((((((((((.....)))))))).........(((((.....))--)))......)))))))------------)...... ( -29.40)
>DroEre_CAF1 47755 92 + 1
UUACAAUGAGUGGGCCCACCAGACGUAUGAGUUAUGUUCCA-AAACCUCGGAGUAUGCCAU--GCCAAUUUCGUGGCCCUAG---CUUGCUUUAAAAU
.......(((((((((.((.(((.(((((.((.(((((((.-.......))))))))))))--))...))).)))))))..)---))).......... ( -23.10)
>DroYak_CAF1 51610 97 + 1
UUACAAUGAGUGGGCCCAGCAGACGUAUGAGUUAUGUUUGA-AAAUGUCGGCGAAUGCCAUUUGCCAAUUCGCUGGCCCUACUACAAUGCUUUAAAAU
...((.((((((((.((((((((((((.....)))))))..-.......(((((((...))))))).....))))).)))))).)).))......... ( -32.00)
>consensus
UUACAAUGAGUGGGCCCACCAGACGUAUGAGUUAUGUUUGA_AAAUGUCGGCGAAUGCCAU__GCCAAUUUAGUGGCCCU_____CAUGCUUUAAAAU
...........((((((((((((((((.....)))))))).........(((...........)))......)))))))).................. (-18.34 = -19.28 +   0.94)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:19 2006