Locus 1894

Sequence ID 3L_DroMel_CAF1
Location 5,300,704 – 5,300,801
Length 97
Max. P 0.830058
window2950

overview

Window 0

Location 5,300,704 – 5,300,801
Length 97
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 74.88
Mean single sequence MFE -20.45
Consensus MFE -15.05
Energy contribution -15.01
Covariance contribution -0.04
Combinations/Pair 1.18
Mean z-score -1.34
Structure conservation index 0.74
SVM decision value 0.71
SVM RNA-class probability 0.830058
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5300704 97 - 23771897
CAGAACCGGAAACUCUGCAGCGGAAGUGCAGCCAGUUCUUUUUUGCUUCUUUUCU-----------UUUUUUUGAGGAA-AAAC---CCCGUAACACCCUUCU-AUUUUCCCU
.(((((.((.....(((((.(....)))))))).)))))...((((...((((((-----------((.....))))))-))..---...)))).........-......... ( -19.00)
>DroSec_CAF1 47984 93 - 1
CAGAACCGGAAACUCUGCAGCGGAAGUGCAGCCAGUUCUUUUU----GCUUUUCU-----------UUUU-UUGAGGGAAAACC---CCCGCCCCACCCUUCU-AUUUUCCCU
.(((((.((.....(((((.(....)))))))).)))))....----........-----------....-...((((((((..---................-.)))))))) ( -20.71)
>DroSim_CAF1 49504 92 - 1
CAGAACCGGAAACUCUGCAGCGGAAGUGCAGCCAGUUCUUUAU----GCUUUUCU-----------UUUU-UUGAGGGA-AACC---CCCGCCCCGCCCUUCU-AUUUUCCCU
.(((((.((.....(((((.(....)))))))).)))))....----........-----------....-...(((((-((..---................-..))))))) ( -19.85)
>DroYak_CAF1 51063 104 - 1
CAGAACCGGAAACUCUGCAGCGGAAGUGCAGCCAGUUCUAUUU----UCUUUUCUUUAUUUUUUUUUUUUUUGAAGGGA-AAACCACCUUCCACUGCCCGCC----CUUCCCU
.(((((.((.....(((((.(....)))))))).)))))....----.........................((((((.-....((........))....))----))))... ( -22.40)
>DroAna_CAF1 47460 88 - 1
CCGAACCGGAAACUCUGCAGCGGAAGUGCAGCCAGUUUUUU------CCUUCUUU-----------UUUU-UUUGGGG--CUUC---CCC-CUUCAACCCACUGAAUAUCCC-
..(((..((((((((((((.(....))))))..))))))).------..)))...-----------....-...((((--....---)))-)((((......))))......- ( -20.30)
>consensus
CAGAACCGGAAACUCUGCAGCGGAAGUGCAGCCAGUUCUUUUU____GCUUUUCU___________UUUU_UUGAGGGA_AAAC___CCCGCACCACCCUUCU_AUUUUCCCU
.(((((.((.....(((((.(....)))))))).)))))..................................((((....................))))............ (-15.05 = -15.01 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:18 2006