Locus 1893

Sequence ID 3L_DroMel_CAF1
Location 5,298,394 – 5,298,491
Length 97
Max. P 0.775246
window2949

overview

Window 9

Location 5,298,394 – 5,298,491
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 94.85
Mean single sequence MFE -24.80
Consensus MFE -22.62
Energy contribution -23.82
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.26
Structure conservation index 0.91
SVM decision value 0.54
SVM RNA-class probability 0.775246
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5298394 97 - 23771897
GUGUGGAUAUAUGGCCAUCGUCGUAGUCGAAGGUCAUUUGUCUUAUUGGCAGCAGAUAUAUGGCUAUUGGUGAAAUAUCUGGAGAGUUAUUUGCGAG
.((..((((.((((((.(((.......))).))))))(((((.....)))))(((((((.(.((.....)).).)))))))......))))..)).. ( -26.70)
>DroSec_CAF1 45677 95 - 1
GUGUGGAUAUAUGGCCAUCGUCGUAGUCGAAGGUCAUUUGUCUUAUUGGCAGCAGAU--AUGGCUAUUGGUGAAAUAUCUGGAGAGUUAUUUGCGAG
.((..((((.((((((.(((.......))).))))))(((((.....)))))(((((--((..(.......)..)))))))......))))..)).. ( -25.70)
>DroSim_CAF1 47224 97 - 1
GUGUGGAUAUAUGGCCAUCGUCGUAGUCGAAGGUCAUUUGUCUUAUUGGCAGCAGAUAUAUGGCUAUUGGUGAAAUAUCUGGAGAGUUAUUUGCGAG
.((..((((.((((((.(((.......))).))))))(((((.....)))))(((((((.(.((.....)).).)))))))......))))..)).. ( -26.70)
>DroEre_CAF1 45008 97 - 1
GUGUGGAAAUAUGGCAAUCGUCGUAUUCGAGGGUCAUUUGUCUUAUUGGCAGCAGAUAUAUGGCUAUUGGUGAAAUAUCUGGAGAGUUAUUUGCGUG
..(..((...(((((..(((.......)))..)))))(((((.....)))))(((((((.(.((.....)).).)))))))........))..)... ( -22.40)
>DroYak_CAF1 48652 97 - 1
GUGUGGAAAUAUGGCCAUCGACGUAUUCGUAGGUCAUUUGUCUUAUUGGCAGCAGAUAUAUGGCUAUUGGUGAAAUAUCUGGAGAGUUAUUUGCUUA
..(..((...((((((..(((.....)))..))))))(((((.....)))))(((((((.(.((.....)).).)))))))........))..)... ( -22.50)
>consensus
GUGUGGAUAUAUGGCCAUCGUCGUAGUCGAAGGUCAUUUGUCUUAUUGGCAGCAGAUAUAUGGCUAUUGGUGAAAUAUCUGGAGAGUUAUUUGCGAG
..(..((((.((((((.(((.......))).))))))(((((.....)))))(((((((.(.((.....)).).)))))))......))))..)... (-22.62 = -23.82 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:17 2006