| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,292,023 – 5,292,175 |
| Length | 152 |
| Max. P | 0.985872 |
| Location | 5,292,023 – 5,292,142 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 87.75 |
| Mean single sequence MFE | -19.48 |
| Consensus MFE | -17.96 |
| Energy contribution | -18.00 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.72 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.37 |
| SVM RNA-class probability | 0.947030 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5292023 119 - 23771897 AUUUCUGGCUGUAAUAUAUUUCCCU-CAGUGCAUAUAUAGUUCCCUCAAAAAACGUUGGCGUAACAUAAACGCCAACACAUAACCGUAAACAUAUUUCAUGCACUUUUUAUACGAUUGGC .........................-.(((((((..((((((............((((((((.......))))))))((......)).))).)))...)))))))............... ( -20.90) >DroSec_CAF1 39441 112 - 1 AUUUCUGACUGUAAUAUAUUUCCCU-CAGUGCAC-------UUUCUCAAAAAACGUUGGCGUAACAUAAACGCCAACACAUAACCGUAAACAUAUUUCAUGCACUUUUUAUACGAUUGGC .........................-.((((((.-------.............((((((((.......))))))))((......))............))))))............... ( -19.40) >DroSim_CAF1 40271 112 - 1 AUUUCUGGCUGUAAUAUAUUUCCCU-CAGUGCAC-------UUUCUCAAAAAACGUUGGCGUAACAUAAACGCCAACACAUAACCGUAAACAUAUUUCAUGCACUUUUUAUACGAUUGGC .........................-.((((((.-------.............((((((((.......))))))))((......))............))))))............... ( -19.40) >DroEre_CAF1 38786 103 - 1 ---------UAAUAUACAGUUUCCU-CAGUGCAC-------UUUCUCAAAAAACGUUGGCGUAACAUAAAUGCCAACACAUAACCGUAAACAUAUUUCAUGCACUUUUUAUUCGAUUGGC ---------.......(((((....-.((((((.-------.............((((((((.......))))))))((......))............))))))........))))).. ( -19.22) >DroYak_CAF1 40788 112 - 1 -UUACUGACUGUUAUGCAUUUUCCUCCAGUGCAC-------UUUCUCAAAAAACAUUGGCGUAACAUAAACGCCAACACAUAACCGUUAACAUAUUUCAUGCACUUUUUAUUCGAUUGGC -....((((.((((((((((.......)))))..-------..............(((((((.......)))))))...))))).))))............................... ( -18.50) >consensus AUUUCUGACUGUAAUAUAUUUCCCU_CAGUGCAC_______UUUCUCAAAAAACGUUGGCGUAACAUAAACGCCAACACAUAACCGUAAACAUAUUUCAUGCACUUUUUAUACGAUUGGC ...........................((((((.....................((((((((.......))))))))((......))............))))))............... (-17.96 = -18.00 + 0.04)
| Location | 5,292,063 – 5,292,175 |
|---|---|
| Length | 112 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.23 |
| Mean single sequence MFE | -18.82 |
| Consensus MFE | -12.91 |
| Energy contribution | -12.91 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.69 |
| SVM decision value | 2.02 |
| SVM RNA-class probability | 0.985872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5292063 112 - 23771897 CCAAAAUCCUUCUAAAUACAUAGGAAUGCGUAUAUUUCUGGCUGUAAUAUAUUUCCCU-CAGUGCAUAUAUAGUUCCCUCAAAAAACGUUGGCGUAACAUAAACGCCAACACA ......................(((((..((((((..((((..(..........)..)-)))...)))))).)))))..........((((((((.......))))))))... ( -22.80) >DroSec_CAF1 39481 101 - 1 ----GAUCCUUCUAAAUACAUAAAUAUGCUUAUAUUUCUGACUGUAAUAUAUUUCCCU-CAGUGCAC-------UUUCUCAAAAAACGUUGGCGUAACAUAAACGCCAACACA ----..............((.((((((....)))))).))((((..............-))))....-------.............((((((((.......))))))))... ( -16.64) >DroSim_CAF1 40311 98 - 1 ----G---CUUCUAAAUACAUUAGAAUGCGUAUAUUUCUGGCUGUAAUAUAUUUCCCU-CAGUGCAC-------UUUCUCAAAAAACGUUGGCGUAACAUAAACGCCAACACA ----(---(((((((.....)))))).))(((((((.(.....).)))))))......-........-------.............((((((((.......))))))))... ( -21.10) >DroYak_CAF1 40828 100 - 1 UGCAAAUCCUUCAAAACACAAAAAAGAG------UUACUGACUGUUAUGCAUUUUCCUCCAGUGCAC-------UUUCUCAAAAAACAUUGGCGUAACAUAAACGCCAACACA .........................(((------..(.((((((...............)))).)).-------)..)))........(((((((.......))))))).... ( -14.76) >consensus ____AAUCCUUCUAAAUACAUAAAAAUGCGUAUAUUUCUGACUGUAAUAUAUUUCCCU_CAGUGCAC_______UUUCUCAAAAAACGUUGGCGUAACAUAAACGCCAACACA ........................................((((...............))))........................((((((((.......))))))))... (-12.91 = -12.91 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:16 2006