Locus 189

Sequence ID 3L_DroMel_CAF1
Location 542,725 – 542,832
Length 107
Max. P 0.648120
window272

overview

Window 2

Location 542,725 – 542,832
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.69
Mean single sequence MFE -23.38
Consensus MFE -16.02
Energy contribution -16.41
Covariance contribution 0.39
Combinations/Pair 1.35
Mean z-score -1.91
Structure conservation index 0.69
SVM decision value 0.24
SVM RNA-class probability 0.648120
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 542725 107 + 23771897
AU----UUAAGGCCUUUUCUGAAAAAUCGUUUC-GAAAAAUUUAAAAUGCCCAUGCAAAGGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAU--------UCCGGGCCAACAACCAA
..----....(((((((((.((((.....))))-)))).........(((....)))..((((((((((.................)))))))..--------))))))))......... ( -25.73)
>DroSec_CAF1 16745 107 + 1
AU----UUAAGGCCUUUUCUGAAAAAUCGUUUC-GAAAAAUUUAAAAUGCCCAUGCAAAGGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAU--------UCCGGGCCAACAACCAA
..----....(((((((((.((((.....))))-)))).........(((....)))..((((((((((.................)))))))..--------))))))))......... ( -25.73)
>DroSim_CAF1 17653 107 + 1
AU----UUGAGGCCUUUUCUGAAAAAUCGUUUC-GAAAAAUUUAAAAUGCCCAUGCAAAGGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAU--------UCCGGGCCAACAACCAA
..----....(((((((((.((((.....))))-)))).........(((....)))..((((((((((.................)))))))..--------))))))))......... ( -25.73)
>DroEre_CAF1 17125 106 + 1
UU----UUGAGGC-UUUUCUGAAAAAUCGUUUU-GAGAAAUUUAAAAUGCCCAUACAAAAGAGGCGUGUCAAUUACAUUAACUAGAACACGCCAU--------UCCGGGCCAACAACCAA
..----....((.-.(((((.((((....))))-.)))))........((((...(....).((((((((..............).)))))))..--------...))))......)).. ( -22.34)
>DroYak_CAF1 17347 115 + 1
UU----UCGGGGCCUAUUCUGAACAAUCGUUUU-AAAAAAUUUAAAAUGCCCAUGCAAAAGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAUUCCAACAUUCCGGGCCAACAACCAA
..----....(((((..(((...((..((((((-((.....))))))))....))....)))(((((((.................))))))).............)))))......... ( -24.13)
>DroAna_CAF1 22364 104 + 1
CUUCCAUUCAGAAAUUAUUUAAAAAUUCUUUUUGGAAAAAUUCAAAAUUCCAAUGCCAACGAGGCGUUUCAAUUACACUAACUAGAACAUGCCAG--------GCCAGGCCC--------
.(((((...((((.((......)).))))...)))))........((((..((((((.....))))))..))))................(((..--------....)))..-------- ( -16.60)
>consensus
AU____UUGAGGCCUUUUCUGAAAAAUCGUUUC_GAAAAAUUUAAAAUGCCCAUGCAAAGGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAU________UCCGGGCCAACAACCAA
..........(((((((((.((((.....)))).))))........................(((((((.................))))))).............)))))......... (-16.02 = -16.41 +   0.39) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:19 2006