Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 542,725 – 542,832 |
Length | 107 |
Max. P | 0.648120 |
Location | 542,725 – 542,832 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.69 |
Mean single sequence MFE | -23.38 |
Consensus MFE | -16.02 |
Energy contribution | -16.41 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.35 |
Mean z-score | -1.91 |
Structure conservation index | 0.69 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648120 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 542725 107 + 23771897 AU----UUAAGGCCUUUUCUGAAAAAUCGUUUC-GAAAAAUUUAAAAUGCCCAUGCAAAGGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAU--------UCCGGGCCAACAACCAA ..----....(((((((((.((((.....))))-)))).........(((....)))..((((((((((.................)))))))..--------))))))))......... ( -25.73) >DroSec_CAF1 16745 107 + 1 AU----UUAAGGCCUUUUCUGAAAAAUCGUUUC-GAAAAAUUUAAAAUGCCCAUGCAAAGGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAU--------UCCGGGCCAACAACCAA ..----....(((((((((.((((.....))))-)))).........(((....)))..((((((((((.................)))))))..--------))))))))......... ( -25.73) >DroSim_CAF1 17653 107 + 1 AU----UUGAGGCCUUUUCUGAAAAAUCGUUUC-GAAAAAUUUAAAAUGCCCAUGCAAAGGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAU--------UCCGGGCCAACAACCAA ..----....(((((((((.((((.....))))-)))).........(((....)))..((((((((((.................)))))))..--------))))))))......... ( -25.73) >DroEre_CAF1 17125 106 + 1 UU----UUGAGGC-UUUUCUGAAAAAUCGUUUU-GAGAAAUUUAAAAUGCCCAUACAAAAGAGGCGUGUCAAUUACAUUAACUAGAACACGCCAU--------UCCGGGCCAACAACCAA ..----....((.-.(((((.((((....))))-.)))))........((((...(....).((((((((..............).)))))))..--------...))))......)).. ( -22.34) >DroYak_CAF1 17347 115 + 1 UU----UCGGGGCCUAUUCUGAACAAUCGUUUU-AAAAAAUUUAAAAUGCCCAUGCAAAAGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAUUCCAACAUUCCGGGCCAACAACCAA ..----....(((((..(((...((..((((((-((.....))))))))....))....)))(((((((.................))))))).............)))))......... ( -24.13) >DroAna_CAF1 22364 104 + 1 CUUCCAUUCAGAAAUUAUUUAAAAAUUCUUUUUGGAAAAAUUCAAAAUUCCAAUGCCAACGAGGCGUUUCAAUUACACUAACUAGAACAUGCCAG--------GCCAGGCCC-------- .(((((...((((.((......)).))))...)))))........((((..((((((.....))))))..))))................(((..--------....)))..-------- ( -16.60) >consensus AU____UUGAGGCCUUUUCUGAAAAAUCGUUUC_GAAAAAUUUAAAAUGCCCAUGCAAAGGAGGCGUGUCAAUUACAUUAACUAGAGCACGCCAU________UCCGGGCCAACAACCAA ..........(((((((((.((((.....)))).))))........................(((((((.................))))))).............)))))......... (-16.02 = -16.41 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:19 2006