Locus 1888

Sequence ID 3L_DroMel_CAF1
Location 5,282,450 – 5,282,559
Length 109
Max. P 0.961816
window2942

overview

Window 2

Location 5,282,450 – 5,282,559
Length 109
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 77.27
Mean single sequence MFE -27.73
Consensus MFE -18.33
Energy contribution -18.50
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -2.11
Structure conservation index 0.66
SVM decision value 1.53
SVM RNA-class probability 0.961816
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5282450 109 - 23771897
ACUGAAAAACU---GACAGCACUGUUGCACGGUCUGUGUCUGCUCGGCUUUUGUCAAAAUAUAUGAUGCUCAUAUGUUAGCCGGCACUCAACGUGUGCCGCAUUAUUCACUC
..((((.....---.((((.((((.....))))))))...(((..((((........((((((((.....))))))))))))(((((.......))))))))...))))... ( -31.30)
>DroPse_CAF1 66704 85 - 1
---------------------------UGGGCUCUCGCUCUCUCCGGCUUUUGUCAAAAUAUAUGAUGCUCAUAUGUUAGCCGGCACUCAACGUGUGCCGCAUUAUUCACUC
---------------------------.((((....)))).....((((........((((((((.....))))))))))))(((((.......)))))............. ( -23.60)
>DroEre_CAF1 29664 103 - 1
------GAUCU---GGCAGCACUGUUGCACGGUCUGUGUCUGCUCGGCUUUUGUCAAAAUAUAUGAUGCUCAUAUGUUAGCCGGCACUCAACGUGUGCCGCAUUAUUCACUC
------((((.---.(((((...)))))..)))).(((..(((..((((........((((((((.....))))))))))))(((((.......)))))))).....))).. ( -31.90)
>DroYak_CAF1 31001 103 - 1
------AAACU---GACAACACUGUGGCACGGCCUGUCUCUACUCGGCUUUUGUCAAAAUAUAUGAUGCUCAUAUGUUAGCCGGCACUCAACGUGUGCCGCAUUAUUCACUC
------.....---........((((((.((((............(((....)))..((((((((.....)))))))).))))((((.....)))))))))).......... ( -28.80)
>DroAna_CAF1 28672 109 - 1
A---AAAAAGUAUACCCAACUCUGAUGUUAACUCCGGCUCGUGUUGGGCUUUGUCAAAAUAUAUGAUGCUCAUAUGUUAGCCGGCACUCAACGUGUGCCGCAUUAUUCACUC
.---..................((((((.......(((((((((.((((...((((.......)))))))))))))..))))(((((.......)))))))))))....... ( -27.20)
>DroPer_CAF1 69342 85 - 1
---------------------------UGGGCUCUCGCUCUCUCCGGCUUUUGUCAAAAUAUAUGAUGCUCAUAUGUUAGCCGGCACUCAACGUGUGCCGCAUUAUUCACUC
---------------------------.((((....)))).....((((........((((((((.....))))))))))))(((((.......)))))............. ( -23.60)
>consensus
______AAACU___G_CA_CACUGUUGCACGCUCUGGCUCUCCUCGGCUUUUGUCAAAAUAUAUGAUGCUCAUAUGUUAGCCGGCACUCAACGUGUGCCGCAUUAUUCACUC
.............................................(((....)))..((((((((.....)))))))).((.(((((.......)))))))........... (-18.33 = -18.50 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:10 2006