| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,281,984 – 5,282,081 |
| Length | 97 |
| Max. P | 0.500000 |
| Location | 5,281,984 – 5,282,081 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 76.06 |
| Mean single sequence MFE | -14.00 |
| Consensus MFE | -5.59 |
| Energy contribution | -6.40 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.40 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5281984 97 + 23771897 ---------U--CUGAAAUUUAAGCCUUU-CCUUCGCAGAAUCUGUCGAGGCUUGCCACAUCUUUAAAUUCAUUUUUUUAAAUAUUCGGUUUACUUCCUCUUCCUCUCA ---------.--(((((...((((((((.-.....((((...)))).)))))))).......((((((........))))))..))))).................... ( -13.30) >DroSec_CAF1 29333 106 + 1 CCUCGUAUCU--CUGAAAUUUAAGCCUUU-CUUUCGCAGAAUCUGUCGAGGCUUGCCACAUCUUUAAAUUCAUUUAUUUAAAUAUUCGGCUUACUUCCUCUUCCUCUCA ....(((...--(((((...((((((((.-.....((((...)))).)))))))).......(((((((......)))))))..)))))..)))............... ( -16.30) >DroSim_CAF1 28973 106 + 1 CCCUGUAUCU--CUGAAAUUUAAGCCUUU-CUUUCGCAGAAUCUGGCGAGGCUUGCCACAUCUUUAAAUUCAUUUAUUUAAAUAUUCGGCUUACUUCCUCUUCCUCUCA ..........--...........(((.((-((.....))))...)))((((...(((..((.(((((((......))))))).))..)))......))))......... ( -17.70) >DroEre_CAF1 29234 83 + 1 -------ACU--CUGAAAUUUAAGCCU-------UGCUGAAUCU----------GCCACAUCUUUAAAUUCAUUUAUUUAAAUAUUCGGCUUACAUCCUCUGCCUCUCA -------...--........((((((.-------.((.......----------))......(((((((......))))))).....))))))................ ( -10.00) >DroYak_CAF1 30550 100 + 1 -------UCU--CUGAAAUUUAAGCCUUUACCUUUGCCGAAUCUGCGGAGGCUUGCCACAUCUUUAAAUUCAUUUAUUUAAAUAUUCGGUUUACUUCCUCUUCCUCUCG -------...--........((((((....(((((((.......)))))))...........(((((((......))))))).....))))))................ ( -15.10) >DroPer_CAF1 68855 87 + 1 -------UCUUACCCACAUCUCGGGCUUUAUG--UGCUC------------CAUCCCACAUCUUUAAAUUCAUUUAUUUAAAUAUGCGGCUUAUUUCUGCUUCCUUCC- -------...............((((......--.)).)------------)...((.(((.(((((((......))))))).))).))...................- ( -11.60) >consensus _______UCU__CUGAAAUUUAAGCCUUU_CCUUCGCAGAAUCUG_CGAGGCUUGCCACAUCUUUAAAUUCAUUUAUUUAAAUAUUCGGCUUACUUCCUCUUCCUCUCA ....................((((((.......................((....)).....(((((((......))))))).....))))))................ ( -5.59 = -6.40 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:09 2006