Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,272,104 – 5,272,197 |
Length | 93 |
Max. P | 0.685799 |
Location | 5,272,104 – 5,272,197 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 74.35 |
Mean single sequence MFE | -25.33 |
Consensus MFE | -12.84 |
Energy contribution | -14.07 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.10 |
Mean z-score | -1.74 |
Structure conservation index | 0.51 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685799 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5272104 93 - 23771897 UUACCAUUUUGCGACAAAUCGCAUUAGGCCCGGACAGUCGA------------GUCGAGUCGACUGUCUCCACU---GUAUGGUAUA------UGCUGCUCUACUCUUAAGCUC .((((((..(((((....)))))...((...((((((((((------------......))))))))))))...---..))))))..------.(((............))).. ( -28.60) >DroSec_CAF1 26881 87 - 1 UUACCAU-UUGCGACAAAUCGCAUUAGGCCCGGACAGUCGC-----------------GUCGACUGUCUCCACU---GUAUGGUAUA------UGCUGCUCUCCCCUUAAGCUC .((((((-.(((((....)))))...((...(((((((((.-----------------..)))))))))))...---..))))))..------.(((............))).. ( -25.70) >DroSim_CAF1 26551 87 - 1 UUACCAU-UUGCGACAAAUCGCAUUAAGCCCGGACAGUCGA-----------------GUCGACUGUCUCCACU---GUAUGGUAUA------UGCUGCUCUCCCCUUAAGCUC .((((((-.(((((....)))))........(((((((((.-----------------..))))))))).....---..))))))..------.(((............))).. ( -24.10) >DroEre_CAF1 26947 96 - 1 UUACCAU-UUGCGACAAAUCGCAUUAGGCCCGGACUGUCG-----------------ACUCGACUGUCUCCACGGUGGUAUGGUAUACUCGUAUAGUGCUAUGCCCUUAAGCUC ..(((..-.(((((....)))))...((...((((.((((-----------------...)))).))))))..)))((((((((((.........))))))))))......... ( -28.30) >DroYak_CAF1 28029 110 - 1 UUACCAU-UUGCGACAAAUCGCAUUAGGACCGGACUGUCGACUGGACUGUCGACUCGACUCGACUGUCUCCACU---GUAUGGUAUACGGGUAUAGUGGUCUCCCCAUAAGCUC .......-.(((((....)))))...((((((((..((((((......))))))..(((......))))))(((---((((.........))))))))))))............ ( -31.20) >DroAna_CAF1 26137 86 - 1 UUACCAU-UUGCGGCAAAUCGCAUUAGGCUCGGACUGACAA-----------------CUCC---GCAUUCAUA---GUAUAGUCUG----ACUACCAUUCCCCCACUAAACCC ...((..-.(((((....)))))...)).((((((((((..-----------------....---.........---)).)))))))----)...................... ( -14.06) >consensus UUACCAU_UUGCGACAAAUCGCAUUAGGCCCGGACAGUCGA_________________CUCGACUGUCUCCACU___GUAUGGUAUA______UACUGCUCUCCCCUUAAGCUC .((((((..(((((....)))))...((...((((.((((....................)))).))))))........))))))............................. (-12.84 = -14.07 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:08 2006