Locus 1885

Sequence ID 3L_DroMel_CAF1
Location 5,271,516 – 5,271,610
Length 94
Max. P 0.961631
window2939

overview

Window 9

Location 5,271,516 – 5,271,610
Length 94
Sequences 4
Columns 94
Reading direction forward
Mean pairwise identity 97.34
Mean single sequence MFE -24.92
Consensus MFE -23.56
Energy contribution -23.87
Covariance contribution 0.31
Combinations/Pair 1.04
Mean z-score -2.62
Structure conservation index 0.95
SVM decision value 1.53
SVM RNA-class probability 0.961631
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5271516 94 + 23771897
GCUUCGGAAUCGGUUUCUGCUUGGCUUGCAACGCUAACAAAACCAACAAAACCAGCAAUUGCGCCAACAACAGAAACAACACCAGCAGCCAGAG
(((..((.....(((((((.(((((..((((.(((..................)))..)))))))))...)))))))....)))))........ ( -21.47)
>DroSec_CAF1 26306 94 + 1
GCUUCGGAAUCGGUUUCUGCUUGGCUUGCAACGCUAACAAAACCAACAAAACCAGCAAUUGCGCCAACAACAGAAACAACACCAGGAGCCAAAG
(((((((.....(((((((.(((((..((((.(((..................)))..)))))))))...)))))))....)).)))))..... ( -25.27)
>DroSim_CAF1 25976 94 + 1
GCUUCGGAAUCGGUUUCUGCUUGGCUUGCAACGCUAACAAAACCAACAAAACCGGCAAUUGCGCCAACAACAGAAACAACACCAGGAGCCAGAG
(((((((.....(((((((.(((((..((((.(((..................)))..)))))))))...)))))))....)).)))))..... ( -25.27)
>DroYak_CAF1 27423 94 + 1
GCUGCGGAAUCGGUUUCUGCUUGGCUUGCAACGCUAACAAAACCAACAAAACCAGCAAUUGCGCCAACAGCAGAAACAACACCAGGAGCCAGAG
(((.(((.....(((((((((((((..((((.(((..................)))..))))))))..)))))))))....)).).)))..... ( -27.67)
>consensus
GCUUCGGAAUCGGUUUCUGCUUGGCUUGCAACGCUAACAAAACCAACAAAACCAGCAAUUGCGCCAACAACAGAAACAACACCAGGAGCCAGAG
(((((((.....(((((((.(((((..((((.(((..................)))..)))))))))...)))))))....)).)))))..... (-23.56 = -23.87 +   0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:07 2006