| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,266,423 – 5,266,518 |
| Length | 95 |
| Max. P | 0.896576 |
| Location | 5,266,423 – 5,266,518 |
|---|---|
| Length | 95 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 85.25 |
| Mean single sequence MFE | -24.73 |
| Consensus MFE | -18.26 |
| Energy contribution | -17.60 |
| Covariance contribution | -0.66 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.896576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5266423 95 + 23771897 CAUUUAUUUAGAACAGCAAAUAA-AAUGUAGUUUUCCCGCCGUGUGAAAAACAGCGACCGCGUUGAACAAAAAGCGGAAAAGCAAAGCGGGAA---------AAC ..(((((((........))))))-).....((((((((((..(((.....)))((..((((.((......)).))))....))...)))))))---------))) ( -26.50) >DroEre_CAF1 21367 95 + 1 UAUUUGUUUAGCAAAGCAACUAA-AAAGCAGUUUUUUCGCCGUGUGAAAAGCAGCGACCGCGUUGAACAAAAAGCGGAAAAGCAAAGCGGGAA---------AAC ...((((((....))))))....-......(((((..(((..(((.....)))((..((((.((......)).))))....))...)))..))---------))) ( -21.50) >DroYak_CAF1 21734 105 + 1 GAUUUAUUUAGCAAAGCGAAUAAAAAAGUAGUUUUUCCGCCGUGUGAAAUACAGCGACCGCGUUGAACAAAAAGCGGAAAAGCAAAGCGGGAAAACCGGGAAAAC ..(((((((.((...)))))))))......((((((((((..(((......(((((....))))).)))....))))))))))....(((.....)))....... ( -26.20) >consensus CAUUUAUUUAGCAAAGCAAAUAA_AAAGUAGUUUUUCCGCCGUGUGAAAAACAGCGACCGCGUUGAACAAAAAGCGGAAAAGCAAAGCGGGAA_________AAC .................................(((((((..(((.....)))((..((((.((......)).))))....))...)))))))............ (-18.26 = -17.60 + -0.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:03 2006