Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 542,400 – 542,517 |
Length | 117 |
Max. P | 0.996282 |
Location | 542,400 – 542,517 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.88 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -31.37 |
Energy contribution | -31.07 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.06 |
Mean z-score | -2.16 |
Structure conservation index | 0.92 |
SVM decision value | 2.68 |
SVM RNA-class probability | 0.996282 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 542400 117 + 23771897 CUCGACUUUAUGGCUGUUGCCUGAAAUGUAACACAUUUCGUGCGUUUUACGCGUUUG-CCUGGCGUAUGAGUAAUAUUUUGUGUUUUUAUUGCGUAUACGUCGUGUGGUCCCCUUUUC-- ...((((.((((((...(((.(((((((((.(.......)))))))))).)))...)-)).((((((((.((((((...........)))))).))))))))))).))))........-- ( -33.00) >DroSec_CAF1 16428 117 + 1 CUCGACUUUAUGGCUGUUGCCUGAAAUGAAACACAUUUCGUGCGUUUUACGCGUUUG-CCUGGCGUAUGAGUAAUAUUUUGUGUUUAUAUUGCGUAUACGUCGUGUGGUCCCCUCCUC-- ...((((.((((((...(((.(((((((...(((.....)))))))))).)))...)-)).((((((((.(((((((.........))))))).))))))))))).))))........-- ( -33.50) >DroSim_CAF1 17336 117 + 1 CUCGACUUUAUGGCUGUUGCCUGAAAUGAAACACAUUUCGUGCGUUUUACGCGUUUG-CCUGGCGUAUGAGUAAUAUUUUGUGUUUUUAUUGCGUAUACGUCGUGUGGUCCCCUCCUC-- ...((((.((((((...(((.(((((((...(((.....)))))))))).)))...)-)).((((((((.((((((...........)))))).))))))))))).))))........-- ( -32.50) >DroEre_CAF1 16823 116 + 1 CUCGACUUUAUGGCUGUUGCCUGAAAUGAAACACAUUUCGUGCGUUUUAUGCGUUUG-CCUGGCGUAUGAGUAAUAUUUUGUGUUUUUAUUGCGCAUACGUAGUGUGGUCCCUUGUU--- ...((((.((((((...(((.(((((((...(((.....)))))))))).)))...)-))..(((((((.((((((...........)))))).))))))).))).)))).......--- ( -32.20) >DroYak_CAF1 17038 117 + 1 CUCGACUUUAUGGCUGUUGCCUGAAAUGAAACACAUUUCGUGCGUUUUAUGCGUUCG-CCGGGCGUAUGAGUAAUAUUUUGUGCUUUUAUUGCGCAUACGUCGUGUGGUCCCUUGUUC-- ...((((.((((((....(((((..(((((((.(((...))).)))))))((....)-))))))(((((.((((((...........)))))).))))))))))).))))........-- ( -35.80) >DroAna_CAF1 22231 120 + 1 CUCGACUUUAUGGCCGUUGCCUGAAAUGAAACACAUUUCGUGCGUUUUAUGCGUCCAACACGGCGUAUGAGUAAUAUUUUGUGUUUUUAUUGCGUAUACGUCGUGUGGUCCGCUGUUCCU ...((((...(((.((((((.(((((((.....))))))).)))......))).)))((((((((((((.((((((...........)))))).)))))))))))))))).......... ( -37.70) >consensus CUCGACUUUAUGGCUGUUGCCUGAAAUGAAACACAUUUCGUGCGUUUUACGCGUUUG_CCUGGCGUAUGAGUAAUAUUUUGUGUUUUUAUUGCGUAUACGUCGUGUGGUCCCCUGUUC__ ...((((.((((((....(((.((((((.....))))))..((((...)))).........)))(((((.((((((...........)))))).))))))))))).)))).......... (-31.37 = -31.07 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:18 2006