| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,240,883 – 5,240,974 |
| Length | 91 |
| Max. P | 0.834494 |
| Location | 5,240,883 – 5,240,974 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 91.34 |
| Mean single sequence MFE | -23.85 |
| Consensus MFE | -19.91 |
| Energy contribution | -19.98 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.86 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.834494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5240883 91 + 23771897 UUUUAGGUUAAAAUACUUUGGCCAAGUGGCUCUGGCAGCAGCACAAGCAUGUGUCAGGACACACUCACACAAGCGCACAAACCAGGCAUCA .....(((((((....))))))).....((.((((.....((....((.(((((.((......)).))))).)))).....)))))).... ( -23.60) >DroSec_CAF1 105244 90 + 1 UUUUAGGUUAAAAUACUUUGGCCAAGUGGCUCUGGAAGCAGCACAAGCAUGUGUCAGGACACACUCACACAAGCGCACAAGCCA-GCAUCA .....(((((((....)))))))...(((((.((...((.((....)).(((((.((......)).))))).))...)))))))-...... ( -25.20) >DroSim_CAF1 101308 90 + 1 UUUUAGGUUAAAAUACUUUGGCCAAGUGGCUCUGGCAGCAGCACAAGCAUGUGUCAGGACACACUCACACAAGCGCACAAGCCA-GCAUCA .....(((((((....)))))))...(((((.((((.((.((....)).(((((.((......)).))))).)))).)))))))-...... ( -26.50) >DroYak_CAF1 107648 78 + 1 UUUUAGGUUAAAAUACUUUGGCCAAGUGGCUCUGGCAGUAGCACAAGCAUGUGUCAGGACACACUCACACA------------A-GCAUCA .....(((((((....))))))).(((((..((((((...((....))...))))))..).))))......------------.-...... ( -20.10) >consensus UUUUAGGUUAAAAUACUUUGGCCAAGUGGCUCUGGCAGCAGCACAAGCAUGUGUCAGGACACACUCACACAAGCGCACAAGCCA_GCAUCA .....(((((((....))))))).(((((..((((((.((((....)).))))))))..).)))).......................... (-19.91 = -19.98 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:50 2006