Locus 1874

Sequence ID 3L_DroMel_CAF1
Location 5,239,075 – 5,239,167
Length 92
Max. P 0.511188
window2920

overview

Window 0

Location 5,239,075 – 5,239,167
Length 92
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 66.71
Mean single sequence MFE -21.67
Consensus MFE -6.29
Energy contribution -6.85
Covariance contribution 0.56
Combinations/Pair 1.14
Mean z-score -1.87
Structure conservation index 0.29
SVM decision value -0.04
SVM RNA-class probability 0.511188
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5239075 92 - 23771897
AGCUAAACGGAAGUUUGCCAUUAUUGCUUUCGGCGUUCAACAACACUGUUAGCCAGU------UUUGG----CCACAAACAUCUCAACUGAGAUUCUA----UCUG
....((((....))))((((..((((((..(((.(((....))).)))..)).))))------..)))----).......(((((....)))))....----.... ( -23.90)
>DroSec_CAF1 103481 79 - 1
AGCUAAACGGAAGUUUGCCAUUAUUGCUUUCGGCGUUCAACAACACUGUUAGCCAGU------GUUGG----CCACAAACAGUUCACCU-----------------
((((((((....))))((((.(((((((..(((.(((....))).)))..)).))))------).)))----).......)))).....----------------- ( -20.60)
>DroSim_CAF1 99556 79 - 1
AGCUAAACGGAAGUUUGCCAUUAUUGCUUUCGGCGUUCAACAACACUGUUAGCCAGU------GUUGG----CCACAAACAGUUGAACU-----------------
.((.((((....)))))).......((.....))((((((((((((((.....))))------)))(.----...).....))))))).----------------- ( -23.10)
>DroEre_CAF1 106517 85 - 1
AGCUAAACGGAAGUUGGCCAUUAUUGC----AUUCA---ACAACACUGUUAGCCAGU------GUUGG----GUACUGGCAGUUCUACUAAAGUUCUA----UCUC
.(((((.(....))))))....(((((----.....---.((((((((.....))))------)))).----......)))))...............----.... ( -21.72)
>DroYak_CAF1 105952 84 - 1
AGCUAAACGGAAGUUUCCCAUUAUUAC----GCCGU---UCAACACUGUUAGCCAGU------GUUGG----ACAGU-ACAAUUAAACUGAAGUUCUA----UUUC
((((((((....))))...........----((.((---(((((((((.....))))------)))))----)).))-.............))))...----.... ( -20.80)
>DroAna_CAF1 100789 97 - 1
GGAUAAACGGAAGUUUGCUAUUAUUGCUUUUGGCGCUUAACAACACUGCCAACUAGCUGCCAUUUUGGUUUUCCAAAUAAUGCCGAAAC-----UUUAAGCC----
((.(((((....)))))........(((.((((((...........))))))..)))..)).(((((((............))))))).-----........---- ( -19.90)
>consensus
AGCUAAACGGAAGUUUGCCAUUAUUGCUUUCGGCGUUCAACAACACUGUUAGCCAGU______GUUGG____CCACAAACAGUUCAACU_____UCUA________
.(.(((((....))))).).....................((((((((.....))))......))))....................................... ( -6.29 =  -6.85 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:49 2006