| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,237,174 – 5,237,264 |
| Length | 90 |
| Max. P | 0.636418 |
| Location | 5,237,174 – 5,237,264 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 85.16 |
| Mean single sequence MFE | -19.98 |
| Consensus MFE | -13.59 |
| Energy contribution | -13.28 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636418 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5237174 90 + 23771897 UGUGCACCACGCGAAUAAAUCAAAAAUGUUGCAAAAAUGUUGAAAUUUUGUGGGAUGUGGGAAAAUGUUGCAAGGUGUGGU-AG-CCACUAU .(((((((((((............((((((.....)))))).....((((..(.((........)).)..)))))))))))-.)-.)))... ( -20.10) >DroSec_CAF1 101506 90 + 1 UGCGCACCACGCGAAUAAAUCAAAAAUGUUGCAAAAAUGUUGAAAUUUUGUGGGAUGUGGGAAAAUGUUGCAAGGUGUGGU-AG-NNNNNNN ..((((((..((((.....((....((.(..(((((.(.....).)))))..).))....)).....))))..))))))..-..-....... ( -20.60) >DroEre_CAF1 104564 83 + 1 UGUGCAUCACGCGAAUAAAUCAAAAAUGUUGCAAAAAUGUUGAAAUUUUGU-------GGGAAAAUGUUGCAAGGUGUGGA-UG-CUACUAC .(((((((.(((((.....))....((.((((((..........(((((..-------...))))).)))))).)))))))-))-).))... ( -16.10) >DroYak_CAF1 104126 85 + 1 UGUGCACCACGCGAAUAAAUCAAAAAUGUUGCAAAAAUGUUGAAAUUUUGC-------GGGAAAAUGUUGCAAGGCGUGGUGUGUGUACUAC .(..((((((((............((((((.....)))))).....(((((-------((.......)))))))))))))))..)....... ( -23.10) >consensus UGUGCACCACGCGAAUAAAUCAAAAAUGUUGCAAAAAUGUUGAAAUUUUGU_______GGGAAAAUGUUGCAAGGUGUGGU_AG_CUACUAC .....(((((((((.....)).......((((((..........(((((.(........).))))).)))))).)))))))........... (-13.59 = -13.28 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:43 2006