Locus 1869

Sequence ID 3L_DroMel_CAF1
Location 5,235,829 – 5,235,923
Length 94
Max. P 0.919416
window2912

overview

Window 2

Location 5,235,829 – 5,235,923
Length 94
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 97.70
Mean single sequence MFE -30.29
Consensus MFE -28.66
Energy contribution -29.23
Covariance contribution 0.56
Combinations/Pair 1.03
Mean z-score -2.30
Structure conservation index 0.95
SVM decision value 1.13
SVM RNA-class probability 0.919416
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5235829 94 - 23771897
UGGUGGCAUUUCCCAUUGGCAUUUCCCACUCAAACUUUUGGUUCGGUUUACCGAGAAAAGAGGACUAUCUAUUGAUGGCUGGAGAUGCUAGCUA
.(.((((((((((...(((......)))......(((((..(((((....)))))..)))))..(((((....)))))..)))))))))).).. ( -31.30)
>DroSec_CAF1 100136 94 - 1
UGGUGGCAUUUCCCAUUGGCAUUUCCCACUCGAACUUUUGGUUCGGUUUACCGAGAAAAGAGGACUAUCUAUUGAUGGCUGGAGAUGCCAGCUA
.(.((((((((((...(((......)))......(((((..(((((....)))))..)))))..(((((....)))))..)))))))))).).. ( -33.60)
>DroEre_CAF1 103231 94 - 1
UGGUGGCAUUUCCCAUUGGCAUUUCCCACUCGAACUUUUGGUUCGGUUUACCGAGAAAAGAGGACUAUCUAUUGAUGGCUGAAGAUGCCAGCUA
.(.((((((((....(..((...........(..(((((..(((((....)))))..)))))..)((((....))))))..))))))))).).. ( -28.20)
>DroYak_CAF1 102728 94 - 1
UGGUGGCAUUUCCCAUUGGCAUUUCCCACUCGAACUUUCGGUUCGGUUUACCGAGAAAAGAGGACUAUCUAUUGAUGGCUGAAGAUGCCAGCUA
.(.((((((((.((((..(.........(((....(((((((.......)))))))...))).........)..))))....)))))))).).. ( -28.07)
>consensus
UGGUGGCAUUUCCCAUUGGCAUUUCCCACUCGAACUUUUGGUUCGGUUUACCGAGAAAAGAGGACUAUCUAUUGAUGGCUGAAGAUGCCAGCUA
.(.((((((((((...(((......)))......(((((..(((((....)))))..)))))..(((((....)))))..)))))))))).).. (-28.66 = -29.23 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:42 2006