Locus 1867

Sequence ID 3L_DroMel_CAF1
Location 5,233,594 – 5,233,689
Length 95
Max. P 0.898529
window2907

overview

Window 7

Location 5,233,594 – 5,233,689
Length 95
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 88.36
Mean single sequence MFE -19.23
Consensus MFE -15.28
Energy contribution -16.16
Covariance contribution 0.88
Combinations/Pair 1.20
Mean z-score -1.94
Structure conservation index 0.79
SVM decision value 1.00
SVM RNA-class probability 0.898529
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5233594 95 - 23771897
UAAACAUACAAAAAGGACAUUUUGCCAAGGAAACAA-AGAAAACCAUUUUCCUUUCACUCAAAUUCUAUGUUGUGAAGGCAACGAGGGGAAAUGAA
.................((((((.(((((((((...-..........)))))))..............((((((....)))))).)).)))))).. ( -17.72)
>DroSec_CAF1 97915 95 - 1
UAAACACACAAAAACGACAUUUUACCAAGGGGACAA-AGAAAACCAUUUUGCUUUCACGCCAAUUCUAGGUUGUGAAAGCAACGAGGGAAAAUGAA
.................((((((.((..(....)..-...........(((((((((((((.......)).)))))))))))...)).)))))).. ( -24.90)
>DroSim_CAF1 95172 95 - 1
UAAGCACACAAAAAGGACAUUUUACCAAGGGGACAA-AGAAAACCAUUUUGCUUUCACGCCAAUUCUAGGUUGUGAAAGCAACGAGGGGAAAUGAA
.................(((((..((..(....)..-...........(((((((((((((.......)).)))))))))))...))..))))).. ( -26.00)
>DroEre_CAF1 100941 96 - 1
UUAACACACAAAAAUGACAAUUUGCAAAGGGGACAAAAGAAAACCAUUUUGCUUUCACACAAAUUCCAGAUUUCGAAAGCAACGAGGGAAAAUGAA
............................(....).........((...((((((((..................))))))))....))........ ( -11.37)
>DroYak_CAF1 100439 95 - 1
UUAACACACAAAAAGGGCAUUUUGCCAAGGGGACAA-AGAAAACCAUUUUCCUUUCACACAAAUUCUAGAUUGUAAAAGCAGCGAGGGGAAAUGAA
...............(((.....)))..(....)..-.......(((((((((((..........(......)..........))))))))))).. ( -16.15)
>consensus
UAAACACACAAAAAGGACAUUUUGCCAAGGGGACAA_AGAAAACCAUUUUGCUUUCACACAAAUUCUAGGUUGUGAAAGCAACGAGGGGAAAUGAA
.................((((((.((..(....)..............(((((((((((............)))))))))))...)).)))))).. (-15.28 = -16.16 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:38 2006