Locus 1865

Sequence ID 3L_DroMel_CAF1
Location 5,227,355 – 5,227,455
Length 100
Max. P 0.960757
window2904

overview

Window 4

Location 5,227,355 – 5,227,455
Length 100
Sequences 5
Columns 113
Reading direction forward
Mean pairwise identity 78.76
Mean single sequence MFE -20.40
Consensus MFE -14.72
Energy contribution -16.16
Covariance contribution 1.44
Combinations/Pair 1.06
Mean z-score -2.11
Structure conservation index 0.72
SVM decision value 1.52
SVM RNA-class probability 0.960757
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5227355 100 + 23771897
----UACCGUCUAGUUUGCCACACUCCC--------CCCCCCCCCCUUCUGACAUGCUACCACAGUGAGUGGCUAUUGAAAAAUAUCCACAAGCUAAGGCAAA-AAUCUCACU
----....(.....((((((.((((...--------...........................)))).((((.((((....)))).)))).......))))))-.....)... ( -17.91)
>DroSec_CAF1 91814 103 + 1
----UCCCGCCUAGUUUGCCACAAACCCUGCCC-----CCCUCCCCCUUGGACACGCUGCCACUGUGAGUGGCUAUUGAAAAAUAUCCACAAGCUAAGGCAAA-AAUCUCACU
----....(((((((((..((((......((..-----.((........))....))......)))).((((.((((....)))).))))))))).))))...-......... ( -24.80)
>DroSim_CAF1 88950 109 + 1
----UCCCGCCUAGUUUGCCACAAACCCUACCCCCGCCCCCUCCCCCUUGGACACGCUGCCACUGUGAGUGGCUAUUGAAAAAUAUCCACAAGCUAAGGCAAAUAAUCUCACU
----....((((((((((.................((....(((.....)))...)).(((((.....)))))((((....))))....)))))).))))............. ( -23.90)
>DroEre_CAF1 93341 86 + 1
----GCCCACCUAGCUUGCCACA---------------------CCCUUUGACACGCCGCCACUGUGAGUGGCUAUUGAGAAAUACCCACAAGCUAA-GCAAA-AAUCUCACU
----.......(((((((.....---------------------..............(((((.....)))))((((....))))....))))))).-.....-......... ( -16.40)
>DroYak_CAF1 94058 91 + 1
CCCCCCCCAGCUAGUUUGCCACC---------------------CCCUUUGACACGCCGCCACUGUGAGUGGCUAUUGAAAAAUAUCCACAAGCUAAGGCAAA-AAUCUCACU
..............((((((...---------------------........((((.......)))).((((.((((....)))).)))).......))))))-......... ( -19.00)
>consensus
____UCCCGCCUAGUUUGCCACA__CCC__________CCC_CCCCCUUUGACACGCUGCCACUGUGAGUGGCUAUUGAAAAAUAUCCACAAGCUAAGGCAAA_AAUCUCACU
...............(((((................................((((.......)))).((((.((((....)))).)))).......)))))........... (-14.72 = -16.16 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:34 2006