Locus 1864

Sequence ID 3L_DroMel_CAF1
Location 5,227,045 – 5,227,150
Length 105
Max. P 0.525115
window2903

overview

Window 3

Location 5,227,045 – 5,227,150
Length 105
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 91.60
Mean single sequence MFE -22.52
Consensus MFE -19.78
Energy contribution -19.53
Covariance contribution -0.25
Combinations/Pair 1.11
Mean z-score -1.29
Structure conservation index 0.88
SVM decision value -0.02
SVM RNA-class probability 0.525115
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5227045 105 - 23771897
GCCACUAAAAUGCCGGCGAACAUGAAAAUUAGAGAAAGGUGAAAUUGCACGAAAUGAGUUUAUACCUUGGCUACGCACAGUGGCCAAACAUAUUUACAUGUCCUC
(((...........)))(.(((((.((((......(((((((((((.((.....))))))).))))))((((((.....))))))......)))).))))).).. ( -25.00)
>DroSec_CAF1 91513 105 - 1
GCCACUAAAAUGGCGGCGAACAUGAAAAUUAGAGAAAGGUGAAAUUGCACGAAAUGAGUUUAUACCUUGGCUACGCACAGUAGCCAAACAUAUUUACAUGUCCUC
((((......))))((...(((((.((((......(((((((((((.((.....))))))).))))))((((((.....))))))......)))).))))))).. ( -27.90)
>DroSim_CAF1 88649 105 - 1
GCCACUAAAAUGCCGGCGAACAUGAAAAUUAGAGAAAGGUGAAAUUGCACGAAAUGAGUUUAUACCUUGGCUACGCACAGUAGCCAAACAUAUUUACAUGUCCUC
(((...........)))(.(((((.((((......(((((((((((.((.....))))))).))))))((((((.....))))))......)))).))))).).. ( -25.30)
>DroEre_CAF1 93067 101 - 1
----CUGAAAUGCCAGCGAACAUGAAAAUUAGAGAAAGGUGAAAUUGCACGAAAUGAGUUUAUACCUUGGCUACGCACAGUAGCCAAACAUAUUUACAUGUCCUC
----(((......))).(.(((((.((((......(((((((((((.((.....))))))).))))))((((((.....))))))......)))).))))).).. ( -22.70)
>DroYak_CAF1 93748 105 - 1
GCCACUGAAAUGCCAGCGAACAUGAAAAUUAGAGAAAGGUGAAAUUGCACGAAAUGAGUUUAUACCUUGGCUACGCACAGUAACCAAACAUAUUUACAUGUCCUC
..(.(((......))).).(((((.((((......(((((((((((.((.....))))))).))))))((.(((.....))).))......)))).))))).... ( -17.00)
>DroAna_CAF1 89969 91 - 1
-----------GCCACCAAACAUGAAAAUUAGAGAAAGGUGAAAUUGCACGAAAUGAGUUUAUACCUUGGCUGUGC---GUAGCCAAACAUAUUUACAUGUCCUC
-----------........(((((.((((......(((((((((((.((.....))))))).))))))(((((...---.)))))......)))).))))).... ( -17.20)
>consensus
GCCACUAAAAUGCCAGCGAACAUGAAAAUUAGAGAAAGGUGAAAUUGCACGAAAUGAGUUUAUACCUUGGCUACGCACAGUAGCCAAACAUAUUUACAUGUCCUC
...................(((((.((((......(((((((((((.((.....))))))).))))))((((((.....))))))......)))).))))).... (-19.78 = -19.53 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:34 2006