| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,226,784 – 5,226,880 |
| Length | 96 |
| Max. P | 0.631352 |
| Location | 5,226,784 – 5,226,880 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 87.00 |
| Mean single sequence MFE | -14.27 |
| Consensus MFE | -10.49 |
| Energy contribution | -11.27 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.631352 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5226784 96 - 23771897 --------CUUUAUAAUAUAACCUUUAUUGCUUAAAAAUUCCUUAAAGUUUUCUUUUAAGUUUUUUUUUUGCUUUGGCAAGCACGCCUAAAGCUCUUUAAAAUC --------..............(((((..((..(((((...(((((((.....)))))))...)))))..))...(((......))))))))............ ( -12.80) >DroSec_CAF1 91255 92 - 1 --------CUUUAUAAUAUAACCUUAAUUGCUUAAAAAUUCCUUUAAGUUUUCUUUUAAGUUU----CUUGCCUUGGCAAGCACGCUUAAAGCUCUUUAAAAUC --------.....................(((((((......)))))))....((((((((..----(((((....)))))...))))))))............ ( -15.60) >DroSim_CAF1 88388 100 - 1 CUUUUUACUUUUAUAAUAUAACCUUAAUUGCUUAAAAAUUCCUUUAAGUUUUCUUUUAAGUUU----AUUGCUUUGGCAAGCACGCUUAAAGCGCUUUAAAAUC .................((((.(((((..(((((((......)))))))......))))).))----)).((((((((......)).))))))........... ( -14.40) >consensus ________CUUUAUAAUAUAACCUUAAUUGCUUAAAAAUUCCUUUAAGUUUUCUUUUAAGUUU____AUUGCUUUGGCAAGCACGCUUAAAGCUCUUUAAAAUC ......................(((((..(((((((......)))))))......)))))..........((((((((......))).)))))........... (-10.49 = -11.27 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:33 2006