Locus 1862

Sequence ID 3L_DroMel_CAF1
Location 5,224,790 – 5,224,905
Length 115
Max. P 0.734384
window2901

overview

Window 1

Location 5,224,790 – 5,224,905
Length 115
Sequences 5
Columns 116
Reading direction forward
Mean pairwise identity 89.77
Mean single sequence MFE -23.46
Consensus MFE -17.23
Energy contribution -17.23
Covariance contribution 0.00
Combinations/Pair 1.22
Mean z-score -1.97
Structure conservation index 0.73
SVM decision value 0.43
SVM RNA-class probability 0.734384
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5224790 115 + 23771897
GUGUUAAUUUGGUUGUGCAAUUAAUGUCUUGUCAUUUUGUUUUGCUUU-UUUUCUUCAACCAAUUUAACUUAUUGGCCAACUAAGCUUGUUAUUGGUUUGUGGUCAAAUUUUGCAA
..(((((.(((((((.((((..((((......)))).....))))...-.......))))))).)))))...(((((((..((((((.......)))))))))))))......... ( -26.70)
>DroSec_CAF1 89246 115 + 1
GUGUUAAUUUGGUUGUGCAAUUACUGUCUUGUCAUUUUGUUUUGAUUU-UUUUAUUCAACCAAUCUAACUUAUUGGCCAACUAAACUUGUUAUUGGUUUGUGGUCAAAUUUUGCAA
..((((..(((((((.(((.....)))...((((........))))..-.......)))))))..))))...(((((((..((((((.......)))))))))))))......... ( -23.40)
>DroSim_CAF1 86380 116 + 1
GUGUUAAUUUGGUUGUGCAAUUACUGUCUUGUCAUUUUGUUUUGAUUUUUUUUAUUCAACCAAUCUAACUUAUUGGCCAACUUAACUUGUUAUUGGUUUGUGGUCAAAUUUUGCAA
..((((..(((((((.(((.....)))...((((........))))..........)))))))..))))...(((((((....((((.......))))..)))))))......... ( -22.70)
>DroEre_CAF1 90811 115 + 1
GUGUUAAUUUUGUUGUGUAAAUUCUGUCUUGUUAUUUUGUUUUGAAGU-UCUUUUUCAAUCAGUAUAGCCUAUUGGCUAACUAAACUCGUUAUUGGUUUGUGGUCAAAUUUUGCAA
...............((((((.........(((((.(((..((((((.-....)))))).))).)))))...(((((((..(((((.((....))))))))))))))..)))))). ( -19.60)
>DroYak_CAF1 91450 115 + 1
GUGUUAAUUUGGCUGUGCAAAUACUGUCUUUUCAGUUUGUUUUGGUUU-UUUUUUCCAAUCAAACUAACUUAUUGGCCAACUAAACUUGUUAUUGGUUUGUGGUCAAAUUUUGCAA
...............((((((............((((((..((((...-......)))).))))))......(((((((..((((((.......)))))))))))))..)))))). ( -24.90)
>consensus
GUGUUAAUUUGGUUGUGCAAUUACUGUCUUGUCAUUUUGUUUUGAUUU_UUUUAUUCAACCAAUCUAACUUAUUGGCCAACUAAACUUGUUAUUGGUUUGUGGUCAAAUUUUGCAA
..((((..(((((((..........(((...............)))..........)))))))..))))...(((((((..((((((.......)))))))))))))......... (-17.23 = -17.23 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:32 2006