Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,223,727 – 5,223,839 |
Length | 112 |
Max. P | 0.539439 |
Location | 5,223,727 – 5,223,839 |
---|---|
Length | 112 |
Sequences | 5 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 93.63 |
Mean single sequence MFE | -15.20 |
Consensus MFE | -12.34 |
Energy contribution | -12.42 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.10 |
Mean z-score | -1.38 |
Structure conservation index | 0.81 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539439 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5223727 112 + 23771897 AGGCCUACGCCAUAAACAUAAACUUCCAUAA-AUUCGCAUAAAAAUAAUAAAGCUUUUGCCACAUAACUCCCUAAUUUAUGCGAAUGCCCCUCUCUCAGAAGGUGUCAACUUU .(((....)))....................-(((((((((((.........((....))....((......)).)))))))))))((((.((.....)).)).))....... ( -17.20) >DroSec_CAF1 88221 112 + 1 AGGCCUAGCCCAUAAAAAUAAACUUCCAUAAAAUUCGCAUAAAAAUAAUAAAGCGUUUGCCACAUAACUCCCUAAUUUAUGCG-AUGCCCCUCUCUCAGAAGGUGUCAACUUU .(((...)))..........................(((((((.........((....))....((......)).)))))))(-(((((..((.....)).))))))...... ( -13.90) >DroSim_CAF1 85331 113 + 1 AGGCCUAGCCCAUAAAAAUAAACUUCCAUAAAAUUCGCAUAAAAAUAAUAAAGCUUUUGCCACAUAACUCCCUAAUUUAUGCGAAUGCCCCUCUCUCAGAAGGUGUCAACUUU .(((...)))......................(((((((((((.........((....))....((......)).)))))))))))((((.((.....)).)).))....... ( -15.30) >DroEre_CAF1 89732 113 + 1 ACGCCUAGCCCAUAAAAAUAAACUUCCAUAAAAUUCGCAUAAAAAUAAUAAAGCUUUUGCCACAUAACUGCCUAAUUUAUGCGAAUGCCCCUCCCUCAAAAGGUGCCAACUUU ................................(((((((((((.........((....))..((....)).....)))))))))))((.(((........))).))....... ( -15.20) >DroYak_CAF1 90383 112 + 1 AGACCAAGCCCAUAAAAAA-AAAUUCCAUAAAAUUCGCAUAAAAAUAAUAAAGCUUUUGCCACAUAACUCCCUAAUUUAUGCGAAUGCCCCUCCCUCUAAAGGUGUCAACUUU .(((...............-............(((((((((((.........((....))....((......)).))))))))))).......(((....))).)))...... ( -14.40) >consensus AGGCCUAGCCCAUAAAAAUAAACUUCCAUAAAAUUCGCAUAAAAAUAAUAAAGCUUUUGCCACAUAACUCCCUAAUUUAUGCGAAUGCCCCUCUCUCAGAAGGUGUCAACUUU .(((............................(((((((((((.........((....))....((......)).)))))))))))...(((........))).)))...... (-12.34 = -12.42 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:30 2006