Locus 186

Sequence ID 3L_DroMel_CAF1
Location 541,169 – 541,263
Length 94
Max. P 0.932187
window269

overview

Window 9

Location 541,169 – 541,263
Length 94
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 91.95
Mean single sequence MFE -31.48
Consensus MFE -26.84
Energy contribution -26.68
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -1.67
Structure conservation index 0.85
SVM decision value 1.22
SVM RNA-class probability 0.932187
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 541169 94 - 23771897
GAAACUGUCUCCGGCAGAUGAAUCACUUGUCCAGAGGCAAC-CCUAUUCGGGACAGGGUAUGCAAACUGUUUCGCAGCAAAUGGAGGCAGCGAGC
....((((((((((((((....)).(((((((..(((....-))).....)))))))...)))...(((.....)))....)))))))))..... ( -31.00)
>DroSec_CAF1 15230 94 - 1
CAAACUGUUUCCUGCAGAUGAAUCACUUGUCCAGAGGCAAC-CCUAUUUGGGACAGGGUAUGCAAACUGUUUCACAGCAAAUGGAGGCAGCGAGC
....((((((((((((((....)).(((((((..(((....-))).....)))))))...))))..(((.....))).....))))))))..... ( -28.20)
>DroSim_CAF1 16138 94 - 1
GAAACCGUCUCCGGCAGAUGAAUCACUUGUCCAGAGGCUAC-CCUAUUUGGGACAGGGUAUGCAAACUGUUUCGCAGCAAAUGGAGGCAGCGAGC
......((((((((((((....)).(((((((..(((....-))).....)))))))...)))...(((.....)))....)))))))....... ( -27.90)
>DroEre_CAF1 15623 95 - 1
AAAACUGGCUCCGGCAGAUGAGUCACUUGUCCAGGGGCAACCCUUUUUUGGGACAGGGCAUGCAAACUGAUUCGCAGCAAAUGGAGGCAGCGAGC
....(((.((((.((.(.((((((((((((((((((....))))......)))))))(....)....)))))))).))....)))).)))..... ( -35.70)
>DroYak_CAF1 15828 94 - 1
AAAGCUGUCUCCGGCAGAUGAAUCACUUGUCCAGAGGCAAC-CUUUUUUGGGACAGGGUAUGCACACUGUUUCGCAGCAAAUGGAGGCAGCGAGC
...(((((((((((((((....)).((((((((((((...)-))))....)))))))...)))...(((.....)))....)))))))))).... ( -34.60)
>consensus
AAAACUGUCUCCGGCAGAUGAAUCACUUGUCCAGAGGCAAC_CCUAUUUGGGACAGGGUAUGCAAACUGUUUCGCAGCAAAUGGAGGCAGCGAGC
....((((((((.(((((....)).(((((((..(((.....))).....)))))))...)))...(((.....))).....))))))))..... (-26.84 = -26.68 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:15 2006