Locus 1858

Sequence ID 3L_DroMel_CAF1
Location 5,222,293 – 5,222,390
Length 97
Max. P 0.785353
window2896

overview

Window 6

Location 5,222,293 – 5,222,390
Length 97
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 95.16
Mean single sequence MFE -22.88
Consensus MFE -21.75
Energy contribution -22.25
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.62
Structure conservation index 0.95
SVM decision value 0.57
SVM RNA-class probability 0.785353
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5222293 97 - 23771897
GUUGAACUUCGUUGCUCGACCCGACGAGACGAAAACGAAUUGAAAUUGGAGAAAUUCCCCAAAAACACACACAAAACCCAGACACGGGAAGAGCAGC-
..........(((((((..((((.(((..((....))..)))...((((.(.....).))))......................))))..)))))))- ( -24.00)
>DroSec_CAF1 86767 95 - 1
GUUGAACUUCGUUGCUCGGCCCGACGAGACGAAAACGAAUUGAAAUUGGAGAAAUUCCCCAAAAA-ACACACAAAAC-CAGCCACGGGAAGAGCAGC-
..........(((((((..((((.(((..((....))..)))...((((.(.....).))))...-...........-......))))..)))))))- ( -24.30)
>DroSim_CAF1 83908 95 - 1
GUUGAACUUCGUUGCUCGGCCCGACGAGACGAAAACGAAUUGAAAUUGGAGAAAUUCCCCAAAAA-ACACACAAAAC-CAGCCACGGGAAGAGCAGC-
..........(((((((..((((.(((..((....))..)))...((((.(.....).))))...-...........-......))))..)))))))- ( -24.30)
>DroEre_CAF1 88236 96 - 1
GUUGAACUUCGUUGCUCGGCCCGACGAGACGAAAACGAAUUGAAAUUGGAGAAAUUCCCCAAAAA-ACACACAAGUC-CAGACACGGCAACAGCAGCG
.........(((((((..(((...(((..((....))..)))...((((.(.....).))))...-...........-.......)))...))))))) ( -18.90)
>consensus
GUUGAACUUCGUUGCUCGGCCCGACGAGACGAAAACGAAUUGAAAUUGGAGAAAUUCCCCAAAAA_ACACACAAAAC_CAGACACGGGAAGAGCAGC_
..........(((((((..((((.(((..((....))..)))...((((.(.....).))))......................))))..))))))). (-21.75 = -22.25 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:27 2006