Locus 1857

Sequence ID 3L_DroMel_CAF1
Location 5,221,549 – 5,221,654
Length 105
Max. P 0.922233
window2895

overview

Window 5

Location 5,221,549 – 5,221,654
Length 105
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 96.58
Mean single sequence MFE -32.27
Consensus MFE -29.98
Energy contribution -29.58
Covariance contribution -0.40
Combinations/Pair 1.08
Mean z-score -1.44
Structure conservation index 0.93
SVM decision value 1.15
SVM RNA-class probability 0.922233
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5221549 105 + 23771897
UUGCUGGGGAGUGGCCACCAAA-AAAGUGUUCUGCUUGCUUUUGGCGUGUAUUUAGCUUGCUUUGCUCCUCUUUUAUUUUUGGGAAAGGUGGCAAUCCUGGCAGAC
((((..(((....((((((...-.((((....(((.(((.....))).)))....)))).......((((...........))))..))))))..)))..)))).. ( -32.80)
>DroSec_CAF1 86057 105 + 1
UUGCUGGGGAGUGGCCACCAAA-AAAGUGUUCUGCUUGCUUUUGGCGUGUAUUUAGCUUGCUUCGCUCCUCUUUUAUUUUUGCGAAAGGUGGCAAUCCUGGCAGAC
((((..(((....((((((...-.((((....(((.(((.....))).)))....))))..(((((...............))))).))))))..)))..)))).. ( -35.76)
>DroSim_CAF1 83179 105 + 1
UUGCUGGGGAGUGGCCACCAAA-AAAGUGUUCUGCUUGCUUUUGGCGUGUAUUUAGCUUGCUUCGCUCCUCUUUUAUUUUUGGGAAAGGUGGCAAUCCUGGCAGAC
((((..(((....((((((...-...(((....((..(((....(....)....)))..))..)))((((...........))))..))))))..)))..)))).. ( -33.00)
>DroEre_CAF1 87491 106 + 1
UUGUUGGGGAGUGGCCACCAAAAAAAGUGUUCUGCUUGCUUUUGGCGUGUAUUUAGCUUGCUUCGCUCCUCUUUUAUUUUUGGAAAAGGUGGCAAUCCUGGCAGAC
((((..(((....((((((.......(((....((..(((....(....)....)))..))..)))(((............)))...))))))..)))..)))).. ( -31.20)
>DroYak_CAF1 88233 105 + 1
UUGUUGGGGAGUGGCCACCAAA-AAAGUGUUCUGCUUCCUGUUGGCGUGUAUUUAGCUUGCUUCGCUCCUCUUUUAUUUUCGGAAAAGGUGGCAAUCCUGGCAGAC
((((..(((....((((((...-.((((....(((..((....))...)))....)))).......(((............)))...))))))..)))..)))).. ( -28.60)
>consensus
UUGCUGGGGAGUGGCCACCAAA_AAAGUGUUCUGCUUGCUUUUGGCGUGUAUUUAGCUUGCUUCGCUCCUCUUUUAUUUUUGGGAAAGGUGGCAAUCCUGGCAGAC
((((..(((....((((((.....((((.....))))......((((.(((.......)))..))))....................))))))..)))..)))).. (-29.98 = -29.58 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:25 2006