Locus 1856

Sequence ID 3L_DroMel_CAF1
Location 5,219,376 – 5,219,485
Length 109
Max. P 0.737540
window2894

overview

Window 4

Location 5,219,376 – 5,219,485
Length 109
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 88.32
Mean single sequence MFE -32.01
Consensus MFE -26.22
Energy contribution -27.80
Covariance contribution 1.58
Combinations/Pair 1.10
Mean z-score -2.18
Structure conservation index 0.82
SVM decision value 0.44
SVM RNA-class probability 0.737540
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5219376 109 - 23771897
UUCCUUUGGCGUUGUUCCGUUUGCCGUUGUCCAACAUCCAACAUAGUCUAAUGCAUCCGCUUAGCCUCGCCUCG-------UUCUCUGAAUGGAAUGGCUUAGCCAGCAGCGCCAA
.....(((((((((((((((((...((((.........))))..((.((((.((....)))))).)).......-------......))))))).((((...)))))))))))))) ( -30.70)
>DroSec_CAF1 84211 109 - 1
UUCCUUUGGCGUUGUUCCGUUUGCCGUUGUCCAACAUCCAACAUAGUCUAAUGCAUCCGCUUAGCCUCGCCUCG-------UUCUCUGAAUGGAAAGGCUAAGUCAGCAGCGCCAA
.....(((((((((((..(..(((.((((..(.............)..)))))))..)(((((((((..((..(-------(((...))))))..))))))))).))))))))))) ( -34.42)
>DroSim_CAF1 81016 109 - 1
UUCCUUUGGCGUUGUUCCGUUUGCCGUUGUCCAACAUCCAACAUAGUCUAAUGCAUCCGCUUAGCCUCGCCUCG-------UUCUCUGAAUGGAAUGGCUAAGCCAGCAGCGCCAA
.....(((((((((((..(..(((.((((..(.............)..)))))))..)((((((((...((..(-------(((...))))))...)))))))).))))))))))) ( -34.52)
>DroEre_CAF1 85232 109 - 1
UUCCUUUGGCGUUGUUCCGUUUGCCGUUGUCCAACAUCCAACAUAGUCUAAUGCAUCCGCUUAGCCUCGCCUCG-------UUCUCUGAAUGGAAUGGCUAAGCCAGCAGCGCCAA
.....(((((((((((..(..(((.((((..(.............)..)))))))..)((((((((...((..(-------(((...))))))...)))))))).))))))))))) ( -34.52)
>DroYak_CAF1 85955 109 - 1
UUCCUUUGGCGUUGUUCCGCUUGCCGUUGUCCAACAUCCAACACAGUCUAAUGCAUCCGCUUAGCCUCGCCUCG-------UUCUCUGAAUGGAAUGGCUAAGCCAGCAGCGCCAA
.....(((((((((((..((((((((((................((.((((.((....)))))).))....(((-------(((...)))))))))))).)))).))))))))))) ( -33.70)
>DroAna_CAF1 82732 100 - 1
UUCUGUUGUCGUUGUUCCGUUUGUUAGUGUCCA-------ACAUGGUCUAAUGCAUCCGCUUAGCCUCGCCUCGCAUCGCACUCUCUGAAUGGAAUUGCUAAGC---------AAA
...((((...((.((((((((((..(((((...-------....((.((((.((....))))))))..((...))...)))))..).))))))))).))..)))---------).. ( -24.20)
>consensus
UUCCUUUGGCGUUGUUCCGUUUGCCGUUGUCCAACAUCCAACAUAGUCUAAUGCAUCCGCUUAGCCUCGCCUCG_______UUCUCUGAAUGGAAUGGCUAAGCCAGCAGCGCCAA
.....(((((((((((..(..(((.((((..(.............)..)))))))..)((((((((...((....................))...)))))))).))))))))))) (-26.22 = -27.80 +   1.58)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:24 2006