Locus 1853

Sequence ID 3L_DroMel_CAF1
Location 5,206,801 – 5,206,892
Length 91
Max. P 0.608616
window2890

overview

Window 0

Location 5,206,801 – 5,206,892
Length 91
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 84.56
Mean single sequence MFE -17.95
Consensus MFE -13.84
Energy contribution -13.65
Covariance contribution -0.19
Combinations/Pair 1.09
Mean z-score -1.89
Structure conservation index 0.77
SVM decision value 0.15
SVM RNA-class probability 0.608616
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5206801 91 - 23771897
CUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUAU-GUUUGCAUUGUGCAAAAAUUC-GUUUCGAC-----
.(((.(((...........)))...)))..(((((((.(((((((.....(((((.......-)))))....))))))))))))-))......----- ( -19.80)
>DroVir_CAF1 88916 88 - 1
CUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCGAACUCAUUAU-GUUUGCAUUG--UA-AAAUUU-GCUUCGAC-----
......((((((...(((((((.(((...(((((.....))))).......))).)))))))-....))))))--..-......-........----- ( -17.60)
>DroWil_CAF1 95850 85 - 1
CUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUAU-GUUUGCAUUGUGGAA---UUU----UCUUC-----
......((((((...((((((((((....(((((.....))))).......))).)))))))-....)))))).....---...----.....----- ( -14.80)
>DroMoj_CAF1 96903 96 - 1
UCGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCGAACUCAUUAU-GUUUGCAUUGUGUA-AAAUUCAGCUACGACUCUCG
(((...((((((...(((((((.(((...(((((.....))))).......))).)))))))-....)))))).((.-.......))..)))...... ( -18.20)
>DroAna_CAF1 70712 86 - 1
CUGGUUCACUGCUCAAUAAUGAUUUCCAUUGCGAGUUAUUUGCAUUUCCCCAAACUCAUUAU-GUUUGCAUUGUGCAGAAUU------UCGAC-----
..(((((...((((..(((((.....))))).))))....(((((.....(((((.......-)))))....))))))))))------.....----- ( -15.80)
>DroPer_CAF1 155113 84 - 1
CCGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUAUUGUAUGCAUUGUCCACC---------CCGCC-----
..((..((((((.((((((((((((....(((((.....))))).......))).)))))))))...)))))).))...---------.....----- ( -21.50)
>consensus
CUGGUUCAGUGCUCAAUAAUGAUUUCCAUUGCGAAUUAUUUGCAUUUCCCCAAACUCAUUAU_GUUUGCAUUGUGCA_AAAUU_____UCGAC_____
......((((((.(.((((((((((....((((((...)))))).......))).))))))).)...))))))......................... (-13.84 = -13.65 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:20 2006