Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 5,197,674 – 5,197,775 |
Length | 101 |
Max. P | 0.670244 |
Location | 5,197,674 – 5,197,775 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -21.97 |
Consensus MFE | -18.51 |
Energy contribution | -18.70 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.53 |
Structure conservation index | 0.84 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670244 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5197674 101 + 23771897 GCAUGAAUAUGCAUAGAUUGCAAAUGAAAUAAA-AAAUUUGUUUGGCAGAGUAGGCGACUCUGUUGCUAUUUGUUGCUUCGAAAAUUUUAUGCAAACAUUUU (((((((..((((.....))))..((((.(((.-((((..((..((((((((.....)))))))))).)))).))).)))).....)))))))......... ( -23.20) >DroSec_CAF1 62641 100 + 1 GAAUGAAUAUGCAUAGCUUGCAAAUGAAACAA--AAAUUUGUUUGGCAGAGUAGACGACUCUGUUGCUAUUUGUUGCCUCGAAAAUGUUAUGCAAACGUUUU (((((....((((((((..(((((((((((((--....))))))((((((((.....))))))))..)))))))............))))))))..))))). ( -24.74) >DroEre_CAF1 63088 97 + 1 GAAUGAAUAUGCAUAUCUUGCAAAUGAAACAAAAAAAUUUGUUUGGCAGAGAAGACGACCCUGUUGCUAUUUGUUGCUUCGCAAAUGUUAUGCAAAC----- .........((((((..((((...(.(((((((....))))))).)....((((.((((...((....))..))))))))))))....))))))...----- ( -20.10) >DroYak_CAF1 62728 96 + 1 GAAUGAAUAUGCAUAUCUUGCAAAUGAAACAAA-AAAUUUAUUUGGCAGAGUAGGCGACUCUGUUGCUAUUUGUUGCUUCGAAAAUGUUAUGCAAAC----- .((..((((.(((.......((((((((.....-...))))))))(((((((.....))))))))))))))..))((..............))....----- ( -19.84) >consensus GAAUGAAUAUGCAUAGCUUGCAAAUGAAACAAA_AAAUUUGUUUGGCAGAGUAGACGACUCUGUUGCUAUUUGUUGCUUCGAAAAUGUUAUGCAAAC_____ .........((((((((...((((((((.........))))))))(((((((((.((((...))))))))))..))).........))))))))........ (-18.51 = -18.70 + 0.19)
Location | 5,197,674 – 5,197,775 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 89.74 |
Mean single sequence MFE | -17.97 |
Consensus MFE | -13.79 |
Energy contribution | -13.60 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.12 |
Mean z-score | -1.65 |
Structure conservation index | 0.77 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643886 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5197674 101 - 23771897 AAAAUGUUUGCAUAAAAUUUUCGAAGCAACAAAUAGCAACAGAGUCGCCUACUCUGCCAAACAAAUUU-UUUAUUUCAUUUGCAAUCUAUGCAUAUUCAUGC ....((((((...............((........))..((((((.....)))))).)))))).....-...........((((.....))))......... ( -14.90) >DroSec_CAF1 62641 100 - 1 AAAACGUUUGCAUAACAUUUUCGAGGCAACAAAUAGCAACAGAGUCGUCUACUCUGCCAAACAAAUUU--UUGUUUCAUUUGCAAGCUAUGCAUAUUCAUUC ........((((((.(........(....).....((((((((((.....))))))..((((((....--))))))...))))..).))))))......... ( -19.40) >DroEre_CAF1 63088 97 - 1 -----GUUUGCAUAACAUUUGCGAAGCAACAAAUAGCAACAGGGUCGUCUUCUCUGCCAAACAAAUUUUUUUGUUUCAUUUGCAAGAUAUGCAUAUUCAUUC -----...((((((...((((((((((........))..(((((.......)))))..(((((((....)))))))..)))))))).))))))......... ( -21.20) >DroYak_CAF1 62728 96 - 1 -----GUUUGCAUAACAUUUUCGAAGCAACAAAUAGCAACAGAGUCGCCUACUCUGCCAAAUAAAUUU-UUUGUUUCAUUUGCAAGAUAUGCAUAUUCAUUC -----...((((((........(((((((.((((.....((((((.....))))))........))))-.)))))))..........))))))......... ( -16.39) >consensus _____GUUUGCAUAACAUUUUCGAAGCAACAAAUAGCAACAGAGUCGCCUACUCUGCCAAACAAAUUU_UUUGUUUCAUUUGCAAGAUAUGCAUAUUCAUUC ........((((((.(......(......).....(((((((((.......)))))..(((((((....)))))))...))))..).))))))......... (-13.79 = -13.60 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:19 2006