Locus 1850

Sequence ID 3L_DroMel_CAF1
Location 5,193,810 – 5,193,919
Length 109
Max. P 0.950167
window2886

overview

Window 6

Location 5,193,810 – 5,193,919
Length 109
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 82.74
Mean single sequence MFE -36.54
Consensus MFE -21.94
Energy contribution -23.62
Covariance contribution 1.68
Combinations/Pair 1.07
Mean z-score -2.77
Structure conservation index 0.60
SVM decision value 1.40
SVM RNA-class probability 0.950167
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5193810 109 - 23771897
-------CGCCCACUUCUCAUGUGCUGC-GCUCCAUUCCACAGAAGUGGGAGUUGGGCGGGCAUUAUUUAUGGCAGGCGUGUUUCUAUAAAGAUACCCUGUUAUUUCUUUAUGUGAA
-------((((((.(((((((...(((.-(........).)))..))))))).)))))).((((.....((((((((.((((((......))))))))))))))......))))... ( -39.70)
>DroSec_CAF1 58872 102 - 1
-------CGCCCACUCCUCAUGUGCUGC-GCUCCAUUCCACAGAAGUGGGAGUUGGGUGGGCAUUAUUUAUGGCAGGCGUGUUUCUAUAGAGAUACCCCGUUAUUUCUUU-------
-------.((((((((..(..(((...)-))....((((((....)))))))..)))))))).......(((((.((.(((((((....))))))))).)))))......------- ( -35.60)
>DroSim_CAF1 59746 110 - 1
-------CGCCCACUGCUCAUGUGCUUCGGCUCCAUUCCACAGAAGUGGGAGUUGGGUGGGCAUUAUUUAUGGCAGGCGUGUUUCUAUAAAGAUAUCCUGUUAUUUCUUUAUGUGAA
-------.((((((((((((((.((....))..))).((((....))))))))..))))))).......((((((((.((((((......))))))))))))))............. ( -38.20)
>DroEre_CAF1 59441 102 - 1
CGUCCACCGCCCACUUCCCAUGUGCUGU-GCUCCAUUCCACAGAAGUGGGAGUUGGGCGGCCAUUAUUUAUGGCAGGCAUGUUUCUAUAA-GAUACCCUGU-------------GAA
....(((((((((.(((((((...((((-(........)))))..))))))).))))))(((((.....)))))(((...((.((.....-)).)))))))-------------).. ( -40.50)
>DroYak_CAF1 58896 105 - 1
-----------CAAUCCUCAUGUGCUGU-GCUCCAGUCCACAGAAGUGGGAGUUGGGCGGGCAUUAUUUAUGGCAGGCAUGUUUCUAUAAACAUACCCUGUUAUUUCCUUAACUGAA
-----------......(((.(((((.(-((.(((.(((((....)))))...))))))))))).....((((((((.((((((....))))))..)))))))).........))). ( -28.70)
>consensus
_______CGCCCACUCCUCAUGUGCUGC_GCUCCAUUCCACAGAAGUGGGAGUUGGGCGGGCAUUAUUUAUGGCAGGCGUGUUUCUAUAAAGAUACCCUGUUAUUUCUUUA__UGAA
.....................(((((...((((..((((((....))))))...)))).))))).....((((((((.((((((......))))))))))))))............. (-21.94 = -23.62 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:17 2006