Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 540,502 – 540,622 |
Length | 120 |
Max. P | 0.678797 |
Location | 540,502 – 540,622 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.97 |
Mean single sequence MFE | -33.57 |
Consensus MFE | -22.50 |
Energy contribution | -23.88 |
Covariance contribution | 1.38 |
Combinations/Pair | 1.15 |
Mean z-score | -1.84 |
Structure conservation index | 0.67 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678797 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 540502 120 - 23771897 UUCAAACGAGUUUAAUGAGACGAGCUCGGGAAUUUGUCAGUUGACUGCUUGCAAAAGGGGUGUGAACAGAACGACGGGUGGAAACCACCCACAAAAUGUAGUCAGAGCUAGGGCAAAAUC (((...(((((((........))))))).)))((((((..(((((((((..((.......))..)..........((((((...)))))).......))))))))......))))))... ( -35.40) >DroSec_CAF1 14550 120 - 1 UUCAAACGAGUUUAAUGAGACGAGCUCGGGAAUUCGUCAGAUGACUGCUUGCAAAAGGGCUGUGAAACGAGCGACAGGUGAAAACCACCCACAAAAUGUAGUCGGAGGUACGGGAAAAUC (((...(((((((........))))))).)))((((((...(((((((........(((((........)))....(((....))).))........)))))))...).)))))...... ( -30.99) >DroSim_CAF1 15451 120 - 1 UUCAAACGAGUUUAAUGAGACGAGCUCGGGAAUUUGUCAGUUGACUGCUUGCAAAAGGGGUGUGCAACGAGCGACGGGUGGAAACCACCCACAAAAAGUAGUCAGGGGUACGGGAAAAUC (((...(((((((........))))))).)))((((((..((((((((((.......((((((((.....)).)).(((....))))))).....))))))))))..).)))))...... ( -36.80) >DroEre_CAF1 14955 118 - 1 UUCAAACGAGUUUAAUGAGACGAGCUCGAGAAUUUGUCAGUUGACUGCUUGCAAAAAGAGUGGGAAUUG--UGUUGGGUGGAAACCACCCACAAAAGUCAGAAAAAGGCACAGGAAAAAC (((...(((((((........)))))))......((((..((((((.((..(.......)..)).....--(((.((((((...)))))))))..)))))).....))))...))).... ( -31.10) >consensus UUCAAACGAGUUUAAUGAGACGAGCUCGGGAAUUUGUCAGUUGACUGCUUGCAAAAGGGGUGUGAAACGAGCGACGGGUGGAAACCACCCACAAAAUGUAGUCAGAGGUACGGGAAAAUC (((...(((((((........))))))).)))(((((...(((((((((((((.......)))))..........(((((.....))))).......))))))))....)))))...... (-22.50 = -23.88 + 1.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:35:14 2006