| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,192,525 – 5,192,628 |
| Length | 103 |
| Max. P | 0.954724 |
| Location | 5,192,525 – 5,192,628 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.16 |
| Mean single sequence MFE | -24.47 |
| Consensus MFE | -11.65 |
| Energy contribution | -12.02 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.954724 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5192525 103 - 23771897 -UCUUCAAUUCAUGUCUAAUGGUGCGCAUAAUCGAAAAUUUAUGUGCGUCCAUCAGG----------AGGCAAAUGGAACUCAAGUGUUUUUACACUUCCAAGAACU------ACCUUUA -.......(((.(((((.(((((((((((((........))))))))).))))....----------)))))..((((.....(((((....))))))))).)))..------....... ( -28.10) >DroPse_CAF1 108602 120 - 1 UUCUUCAAUUCCUGUGUAAUGGUCCGCAUAAUCGAAAAUUUAUGUGCGUCCAUCAGCACAAAAGCAAAGCAAAAUGGAAUUCAAGUGUUUUUACACUUCCAAGAACUACAACUACCUCUA (((((.(((((((((((.((((.((((((((........))))))).).))))..)))))...((...)).....)))))).((((((....))))))..)))))............... ( -28.10) >DroGri_CAF1 69365 100 - 1 CUCUCCG----UUAUGUAAUGGGCCGCAUAAUCGUAAAUUUAUGUGCACCCAUCAAA---------AAGUCAAAUGGCUUUCAAGCGUU-UUACACUUCAAAAAACU------ACCUCUA ......(----(.((((.(((((.(((((((........)))))))..)))))...(---------(((((....))))))...)))).-..)).............------....... ( -19.00) >DroMoj_CAF1 72268 100 - 1 CUCUUCG----UUAUGUAAUGAACCGCAUAAUCGCAAAUUUAUGUGCGCCCAUCAAA---------CAGCCAAAUGGUUCUCAAGCGUU-UUACACUUCAAAAAACU------ACCUCUA ......(----(.((((...(((((((((((........))))))((..........---------..)).....)))))....)))).-..)).............------....... ( -13.60) >DroAna_CAF1 54888 101 - 1 -UCCUCAAUUCGUGUGUAAUGGUGCGCAUAAUCGAAAAUUUAUGCGCGUCCAUCAGA----------AGGCAAAUGGAAUUCAAGUGUCUUUACACUUCCAGGAACU------ACCUC-- -((((......((((...(((((((((((((........))))))))).))))..((----------(((((..((.....))..)))))))))))....))))...------.....-- ( -29.90) >DroPer_CAF1 146025 120 - 1 UUCUUCAAUUCCUGUGUAAUGGUCCGCAUAAUCGAAAAUUUAUGUGCGUCCAUCAGCACAAAAGCAAAGCAAAAUGGAAUUCAAGUGUUUUUACACUUCCAAGAACUACUACUACCUCUA (((((.(((((((((((.((((.((((((((........))))))).).))))..)))))...((...)).....)))))).((((((....))))))..)))))............... ( -28.10) >consensus _UCUUCAAUUCCUGUGUAAUGGUCCGCAUAAUCGAAAAUUUAUGUGCGUCCAUCAGA_________AAGCCAAAUGGAAUUCAAGUGUUUUUACACUUCCAAGAACU______ACCUCUA ..................((((..(((((((........)))))))...)))).............................((((((....))))))...................... (-11.65 = -12.02 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:16 2006