Locus 1847

Sequence ID 3L_DroMel_CAF1
Location 5,180,898 – 5,181,001
Length 103
Max. P 0.684045
window2882

overview

Window 2

Location 5,180,898 – 5,181,001
Length 103
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 72.87
Mean single sequence MFE -22.59
Consensus MFE -12.63
Energy contribution -13.38
Covariance contribution 0.75
Combinations/Pair 1.20
Mean z-score -1.51
Structure conservation index 0.56
SVM decision value 0.31
SVM RNA-class probability 0.684045
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5180898 103 - 23771897
ACAGUGAAAACUUGUGGCGUGUCCACUGAAACGAUAGAACUUUGUGGCUGGAAGAAGUU-UAAUGCACUGGCAAAA----GUAUAAAACCAAAUGCAAGAAAUUGUAC
.(((((.((((((.(..((.(.((((.................)))))))..).)))))-)....)))))......----.............(((((....))))). ( -20.23)
>DroSec_CAF1 46218 89 - 1
ACAGUGAAAACUUGUGGCGUGUUCACUGGAACGAAAGAACUUUGUGGCUGGAACAAGUU-UAAGGCACUGGCAAAA----GUAUAA--------------AAUUGUAC
.(((((.((((((((..((.((.(((.((..(....)..))..)))))))..)))))))-)....)))))......----(((((.--------------...))))) ( -21.20)
>DroSim_CAF1 46160 89 - 1
ACAGUGAAAACUUGUGGCGUGUCCACUGGAACGAGAGAACUUUGUGGCUGGAACAAGUU-UAAGGCACUGGCAAAA----GUAUAA--------------AAUUGUAC
.(((((.((((((((..((.(.((((.((..(....)..))..)))))))..)))))))-)....)))))......----(((((.--------------...))))) ( -22.90)
>DroEre_CAF1 45287 103 - 1
ACAGUGAAAACUUGUGGCGUGUCCACUGAAACGAUAGAAGUUUGUGGCCGGAACGUGUU-UUAUACACUGACAACA----GUGCAAAACAAAAGUACUGAAAUUGUAU
.((((((((((.(((..((.(.((((..((((.......)))))))))))..))).)))-))...)))))((((((----((((.........))))))...)))).. ( -26.30)
>DroYak_CAF1 45681 92 - 1
ACAGUGAAAACUUGUGGCGUGUCCACUGAGGCGAUGGAAGUUUGUGGCUGAAAGGAGUUUUUCUACACUAACAUCA----GUCAAA------------GAAAUUGUAU
(((((..((((((.(..(((.((....)).)))..).)))))).(((((((....(((........)))....)))----))))..------------...))))).. ( -21.60)
>DroAna_CAF1 43703 101 - 1
ACAGUGGAAACUUGUGGCGUGUGCCCUGAAACAAGGGAAGUUUGUGGCGGUUGCAAGUGCGGUUACACUGAAAAAAAAAAGUUGAAAGGAAAAUAA----AA---UAU
.(((((...(((((..((.....((((......))))..((.....)).))..))))).......)))))..........................----..---... ( -23.30)
>consensus
ACAGUGAAAACUUGUGGCGUGUCCACUGAAACGAUAGAACUUUGUGGCUGGAACAAGUU_UAAUACACUGACAAAA____GUAUAA______________AAUUGUAC
.(((((..(((((((..((.(.((((.....(....)......)))))))..)))))))......)))))...................................... (-12.63 = -13.38 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:13 2006