Locus 1846

Sequence ID 3L_DroMel_CAF1
Location 5,179,490 – 5,179,597
Length 107
Max. P 0.500000
window2881

overview

Window 1

Location 5,179,490 – 5,179,597
Length 107
Sequences 4
Columns 107
Reading direction reverse
Mean pairwise identity 94.39
Mean single sequence MFE -24.83
Consensus MFE -18.94
Energy contribution -19.50
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -2.06
Structure conservation index 0.76
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5179490 107 - 23771897
AAAACGGAAAUGAAAGUAAUUUAAAGUGUUAUUAAGUCGUGGGCUGUCCCUGUCAAAGUCCGUGGAAAAGCGCGGGGAAAAUGGGAAAGAGUAGGCGAAUGCGAGGA
....((.(......((((((.......))))))...((((..(((.((((..((....((((((......))))))))....))))...)))..)))).).)).... ( -22.80)
>DroSec_CAF1 44868 107 - 1
AAAACGGAAAUAAAAGUAAUUUAAAGUGUUAUUAAGUCGUGGGCUGUCCCUGUCAAAGUCCGUGGAAAAGCGCGGGGAAAAUGGGGAAGAGUAGGCGAAAGCGAGGA
....((........((((((.......))))))...((((..(((.(((((((.....((((((......))))))....)))))))..)))..))))...)).... ( -25.90)
>DroSim_CAF1 44778 107 - 1
AAAACGGAAAUGAAAGUAAUUUAAAGUGUUAUUAAGUCGUGGGCUGUCCCUGUCAAAGUCCGUGGAAAAGCGCGGGGAAAGUGGAGAAGAGUAGGCGAAAGCGAGGA
....(((..((((.((((((.......))))))...))))...)))(((((((.....((....)).....)))))))................((....))..... ( -23.60)
>DroYak_CAF1 44287 107 - 1
AAAACGGAAAUGAAAGUAAUUUAAAGUGUUAUUAAGUCGUGGGCUGUCCCUGUCAAAGUCCGUGGAAAAGCGCGGAGAGUGUGGGCACAAGUAGGGGAAAGCGAGGA
.........((((.((((((.......))))))...))))..(((.(((((.......((((((......))))))..(((....))).....))))).)))..... ( -27.00)
>consensus
AAAACGGAAAUGAAAGUAAUUUAAAGUGUUAUUAAGUCGUGGGCUGUCCCUGUCAAAGUCCGUGGAAAAGCGCGGGGAAAAUGGGGAAGAGUAGGCGAAAGCGAGGA
....((........((((((.......))))))...((((..(((.((((..(.....((((((......))))))....)..))))..)))..))))...)).... (-18.94 = -19.50 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:12 2006