Locus 1845

Sequence ID 3L_DroMel_CAF1
Location 5,175,649 – 5,175,741
Length 92
Max. P 0.629595
window2880

overview

Window 0

Location 5,175,649 – 5,175,741
Length 92
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 80.07
Mean single sequence MFE -21.78
Consensus MFE -13.82
Energy contribution -13.26
Covariance contribution -0.56
Combinations/Pair 1.19
Mean z-score -1.73
Structure conservation index 0.63
SVM decision value 0.20
SVM RNA-class probability 0.629595
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 5175649 92 - 23771897
GGCGUGGGCCUCG-GAAGUUCCAUCUUUUUUAGGGAGCUACGUCC-------GCCCCUCUUUUUUUUUUUUUUUUUUUGUUAACCCCAA-AACCACCCCUU
((.((((....((-((((((((...........))))))...)))-------).....................(((((.......)))-)))))).)).. ( -19.00)
>DroSec_CAF1 41114 80 - 1
GGCGUGGGCCUCGGGAAGCUCCAUCUU-UUUAGGGAGCUACGUCC-------GCCCCUCCUU------------UUUUGUUAACCCCAA-AACCACCCUUU
((.((((....((((.((((((.....-.....))))))...)))-------).........------------(((((.......)))-))))))))... ( -21.80)
>DroSim_CAF1 41021 79 - 1
GGCGUGGGCCUCG-GAAGCUCCAUCUUUUUUAGGGAGCUGCGUCC-------GCCCCUCCUU------------UUUUGUUAACCCCAA-AACCACCCU-U
((.(.((((..((-..((((((...........)))))).))...-------))))).))..------------(((((.......)))-)).......-. ( -21.40)
>DroEre_CAF1 40045 79 - 1
GGCGUGGGCUGCC-GAAGCUCCAUAUUUUGUAGGGAGUUACGCCC-------GCCCC-CCUU------------UUUUGUUAACCCCAA-AACCAUCCCUU
((.(.((((.(.(-(.((((((.(((...))).)))))).)).).-------)))))-))..------------(((((.......)))-))......... ( -20.40)
>DroYak_CAF1 39532 87 - 1
GGCGUGGGCUGUC-GAAGCUCCAUAUUUUUUAGGGAGUUACGCCAGUUGCCCCGCCC-CCUU------------UUUUGUUAACCCCAAAAACCACCCCUU
((((.((((((.(-(.((((((.((.....)).)))))).)).))...)))))))).-...(------------(((((.......))))))......... ( -26.30)
>consensus
GGCGUGGGCCUCG_GAAGCUCCAUCUUUUUUAGGGAGCUACGUCC_______GCCCCUCCUU____________UUUUGUUAACCCCAA_AACCACCCCUU
((.((((.......(.((((((...........)))))).)...................................(((.......)))...))))))... (-13.82 = -13.26 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:11 2006