| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 5,163,626 – 5,163,724 |
| Length | 98 |
| Max. P | 0.741747 |
| Location | 5,163,626 – 5,163,724 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 82.52 |
| Mean single sequence MFE | -20.29 |
| Consensus MFE | -14.54 |
| Energy contribution | -14.85 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.741747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 5163626 98 + 23771897 -CAUUAAGCAGGCAAUCCGAAGGGCUUUUCCAGCUGGCUUUUCACAAAAGCCCCUGC--CCUUCUACACCAACCCCUCACAUCUCUCACAAAAGCACU-----------------AAG -......((.((....))(((((((......((..((((((.....)))))).))))--))))).............................))...-----------------... ( -19.90) >DroSec_CAF1 29150 96 + 1 -CAUUAAGCAGGCAAUCCGAAGGGCUUUUCCAGCCGGCUUUUCACAAAAGCCCCUGC--CCUUUUCCACCAAC--CUCACAUCUCUCGCAAAAGCACU-----------------AAG -......(((((..........((((.....))))((((((.....)))))))))))--..............--............((....))...-----------------... ( -20.70) >DroSim_CAF1 29103 96 + 1 -CAUUAAGCAGGCAAUCCGAAGGGCUUUUCCAGCCGGCUUUUCACAAAAGCCCCCGC--CCUUCUCCACCAAC--CUCACAUCUCUCGCAAAAGCACU-----------------AAG -......((.((....))(((((((..........((((((.....))))))...))--))))).........--............)).........-----------------... ( -19.22) >DroEre_CAF1 27373 99 + 1 CCAUUAAGCAGGCAAUCCGUAGGGAUUUUCCAGCCGGCUUUUCUCAGAAGCCCCUGCUCCCUUUCCCACCAAC--CUCACAUCUCUCACAGAAGCACU-----------------AAG ......((((((.(((((....)))))........((((((.....))))))))))))...............--.......................-----------------... ( -19.70) >DroYak_CAF1 27430 96 + 1 -CAUUAAGCAGGCAAUCCGUAGGGCUUUUCCAGCCGGCUUUUCUCAAAAGCCCCUGC--CCUCUUCCACCAAC--CUCACAUCCCUCACAAAAGCACU-----------------AAG -......(((((..........((((.....))))((((((.....)))))))))))--..............--.......................-----------------... ( -19.40) >DroAna_CAF1 25328 109 + 1 -CAUUAAGCAAGCAAUCCGAAGGGAUUUUCCAGCCGGCUUUUCCCA-AAGCCCUCGC--CCUUUUGCCGCCAC--UUC--CUCCCCCGCAG-AGCACAAACUUGAGGGAAUUCUAAAG -......(((((.(((((....))))).....((.((((((....)-)))))...))--...)))))......--...--....(((...(-((......)))..))).......... ( -22.80) >consensus _CAUUAAGCAGGCAAUCCGAAGGGCUUUUCCAGCCGGCUUUUCACAAAAGCCCCUGC__CCUUUUCCACCAAC__CUCACAUCUCUCACAAAAGCACU_________________AAG .......(((((..........((((.....))))((((((.....)))))))))))............................................................. (-14.54 = -14.85 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:04 2006